GitLab

10-05-2021 09:53:43 - INFO - Loaded flats/darks from /data/scisofttmp/paleo/nabu_end2end_tests/stylo/rec/SYS01S201_BLISSMAP_SYS01S201_8scans.nx_0000_0004_nabu_processes.hdf5
10-05-2021 09:53:44 - INFO - Estimating center of rotation
10-05-2021 09:53:44 - INFO - Estimated center of rotation: 1298.75
10-05-2021 09:53:44 - ERROR - File /data/scisofttmp/paleo/nabu_end2end_tests/stylo/rec/sinogram_TEST_YS01S201_BLISSMAP_SYS01S201_8scans.nx_0000_0004.hdf5 was built with start_z=1080, end_z=1080 but current configuration asks for start_z=0, end_z=2159
10-05-2021 09:53:44 - ERROR - Cannot resume from step sinogram: cannot use file /data/scisofttmp/paleo/nabu_end2end_tests/stylo/rec/sinogram_TEST_YS01S201_BLISSMAP_SYS01S201_8scans.nx_0000_0004.hdf5
10-05-2021 09:53:44 - INFO - Going to reconstruct slices (0, 2159)
10-05-2021 09:53:44 - INFO - Estimated phase margin: 22 pixels
10-05-2021 09:53:44 - INFO -
Processing sub-volume (0, 78)
10-05-2021 09:53:45 - INFO - Estimated center of rotation: 1298.75
10-05-2021 09:53:46 - WARNING - File already exists: /data/scisofttmp/paleo/nabu_end2end_tests/stylo/rec/sinogram_TEST_YS01S201_BLISSMAP_SYS01S201_8scans.nx_0000_0004/sinogram_TEST_YS01S201_BLISSMAP_SYS01S201_8scans.nx_0000_0004_0000.hdf5. It will be overwritten as requested in configuration
10-05-2021 09:53:46 - INFO - Reading data
10-05-2021 09:53:55 - INFO - Read subvolume (7000, 78, 2560) (5.59 GB) in 9.47 s: 0.590 GB/s
10-05-2021 09:53:57 - INFO - Applying flat-field
10-05-2021 09:53:57 - INFO - Applying double flat-field
10-05-2021 09:53:58 - INFO - Performing phase retrieval
10-05-2021 09:54:00 - INFO - Taking logarithm
10-05-2021 09:54:02 - INFO - Dumping data to /data/scisofttmp/paleo/nabu_end2end_tests/stylo/rec/sinogram_TEST_YS01S201_BLISSMAP_SYS01S201_8scans.nx_0000_0004/sinogram_TEST_YS01S201_BLISSMAP_SYS01S201_8scans.nx_0000_0004_0000.hdf5
10-05-2021 09:54:14 - INFO - Building sinograms
10-05-2021 09:54:14 - INFO - Reconstruction
10-05-2021 09:54:22 - INFO - Computing histogram
10-05-2021 09:54:22 - INFO - Saving data
10-05-2021 09:54:30 - INFO - Wrote /data/scisofttmp/paleo/nabu_end2end_tests/stylo/rec/TEST_YS01S201_BLISSMAP_SYS01S201_8scans.nx_0000_0004/TEST_YS01S201_BLISSMAP_SYS01S201_8scans.nx_0000_0004_0000.hdf5
10-05-2021 09:54:30 - INFO - Saving histogram
10-05-2021 09:54:30 - INFO -
Processing sub-volume (34, 134)
10-05-2021 09:54:30 - INFO - Estimated center of rotation: 1298.75
10-05-2021 09:54:31 - INFO - Reading data
10-05-2021 09:54:43 - INFO - Read subvolume (7000, 100, 2560) (7.17 GB) in 12.58 s: 0.570 GB/s
10-05-2021 09:54:45 - INFO - Applying flat-field
10-05-2021 09:54:45 - INFO - Applying double flat-field
10-05-2021 09:54:45 - INFO - Performing phase retrieval
10-05-2021 09:54:47 - INFO - Taking logarithm
10-05-2021 09:54:49 - INFO - Dumping data to /data/scisofttmp/paleo/nabu_end2end_tests/stylo/rec/sinogram_TEST_YS01S201_BLISSMAP_SYS01S201_8scans.nx_0000_0004/sinogram_TEST_YS01S201_BLISSMAP_SYS01S201_8scans.nx_0000_0004_0056.hdf5
10-05-2021 09:55:01 - INFO - Building sinograms
10-05-2021 09:55:01 - INFO - Reconstruction
10-05-2021 09:55:09 - INFO - Computing histogram
10-05-2021 09:55:09 - INFO - Saving data
10-05-2021 09:55:16 - INFO - Wrote /data/scisofttmp/paleo/nabu_end2end_tests/stylo/rec/TEST_YS01S201_BLISSMAP_SYS01S201_8scans.nx_0000_0004/TEST_YS01S201_BLISSMAP_SYS01S201_8scans.nx_0000_0004_0056.hdf5
10-05-2021 09:55:16 - INFO - Saving histogram
10-05-2021 09:55:16 - INFO -
Processing sub-volume (90, 190)
10-05-2021 09:55:16 - INFO - Reading data
10-05-2021 09:55:19 - INFO - Read subvolume (7000, 100, 2560) (7.17 GB) in 2.39 s: 3.005 GB/s
10-05-2021 09:55:20 - INFO - Applying flat-field
10-05-2021 09:55:20 - INFO - Applying double flat-field
10-05-2021 09:55:21 - INFO - Performing phase retrieval
10-05-2021 09:55:23 - INFO - Taking logarithm
10-05-2021 09:55:24 - INFO - Dumping data to /data/scisofttmp/paleo/nabu_end2end_tests/stylo/rec/sinogram_TEST_YS01S201_BLISSMAP_SYS01S201_8scans.nx_0000_0004/sinogram_TEST_YS01S201_BLISSMAP_SYS01S201_8scans.nx_0000_0004_0112.hdf5
10-05-2021 09:55:36 - INFO - Building sinograms
10-05-2021 09:55:36 - INFO - Reconstruction
10-05-2021 09:55:44 - INFO - Computing histogram
10-05-2021 09:55:44 - INFO - Saving data
10-05-2021 09:55:51 - INFO - Wrote /data/scisofttmp/paleo/nabu_end2end_tests/stylo/rec/TEST_YS01S201_BLISSMAP_SYS01S201_8scans.nx_0000_0004/TEST_YS01S201_BLISSMAP_SYS01S201_8scans.nx_0000_0004_0112.hdf5
10-05-2021 09:55:51 - INFO - Saving histogram
10-05-2021 09:55:51 - INFO -
Processing sub-volume (146, 246)
10-05-2021 09:55:51 - INFO - Reading data
10-05-2021 10:00:18 - INFO - Read subvolume (7000, 100, 2560) (7.17 GB) in 267.07 s: 0.027 GB/s
10-05-2021 10:00:19 - INFO - Applying flat-field
10-05-2021 10:00:19 - INFO - Applying double flat-field
10-05-2021 10:00:20 - INFO - Performing phase retrieval
10-05-2021 10:00:22 - INFO - Taking logarithm
10-05-2021 10:00:24 - INFO - Dumping data to /data/scisofttmp/paleo/nabu_end2end_tests/stylo/rec/sinogram_TEST_YS01S201_BLISSMAP_SYS01S201_8scans.nx_0000_0004/sinogram_TEST_YS01S201_BLISSMAP_SYS01S201_8scans.nx_0000_0004_0168.hdf5
10-05-2021 10:00:37 - INFO - Building sinograms
10-05-2021 10:00:37 - INFO - Reconstruction
10-05-2021 10:00:45 - INFO - Computing histogram
10-05-2021 10:00:45 - INFO - Saving data
10-05-2021 10:00:51 - INFO - Wrote /data/scisofttmp/paleo/nabu_end2end_tests/stylo/rec/TEST_YS01S201_BLISSMAP_SYS01S201_8scans.nx_0000_0004/TEST_YS01S201_BLISSMAP_SYS01S201_8scans.nx_0000_0004_0168.hdf5
10-05-2021 10:00:51 - INFO - Saving histogram
10-05-2021 10:00:52 - INFO -
Processing sub-volume (202, 302)
10-05-2021 10:00:52 - INFO - Reading data
10-05-2021 10:00:54 - INFO - Read subvolume (7000, 100, 2560) (7.17 GB) in 2.42 s: 2.963 GB/s
10-05-2021 10:00:55 - INFO - Applying flat-field
10-05-2021 10:00:55 - INFO - Applying double flat-field
10-05-2021 10:00:56 - INFO - Performing phase retrieval
10-05-2021 10:00:58 - INFO - Taking logarithm
10-05-2021 10:01:00 - INFO - Dumping data to /data/scisofttmp/paleo/nabu_end2end_tests/stylo/rec/sinogram_TEST_YS01S201_BLISSMAP_SYS01S201_8scans.nx_0000_0004/sinogram_TEST_YS01S201_BLISSMAP_SYS01S201_8scans.nx_0000_0004_0224.hdf5
10-05-2021 10:01:10 - INFO - Building sinograms
10-05-2021 10:01:10 - INFO - Reconstruction
10-05-2021 10:01:18 - INFO - Computing histogram
10-05-2021 10:01:18 - INFO - Saving data
10-05-2021 10:01:25 - INFO - Wrote /data/scisofttmp/paleo/nabu_end2end_tests/stylo/rec/TEST_YS01S201_BLISSMAP_SYS01S201_8scans.nx_0000_0004/TEST_YS01S201_BLISSMAP_SYS01S201_8scans.nx_0000_0004_0224.hdf5
10-05-2021 10:01:25 - INFO - Saving histogram
10-05-2021 10:01:26 - INFO -
Processing sub-volume (258, 358)
10-05-2021 10:01:26 - INFO - Reading data
10-05-2021 10:05:40 - INFO - Read subvolume (7000, 100, 2560) (7.17 GB) in 254.30 s: 0.028 GB/s
10-05-2021 10:05:41 - INFO - Applying flat-field
10-05-2021 10:05:41 - INFO - Applying double flat-field
10-05-2021 10:05:42 - INFO - Performing phase retrieval
10-05-2021 10:05:44 - INFO - Taking logarithm
10-05-2021 10:05:46 - INFO - Dumping data to /data/scisofttmp/paleo/nabu_end2end_tests/stylo/rec/sinogram_TEST_YS01S201_BLISSMAP_SYS01S201_8scans.nx_0000_0004/sinogram_TEST_YS01S201_BLISSMAP_SYS01S201_8scans.nx_0000_0004_0280.hdf5
10-05-2021 10:05:59 - INFO - Building sinograms
10-05-2021 10:05:59 - INFO - Reconstruction
10-05-2021 10:06:06 - INFO - Computing histogram
10-05-2021 10:06:06 - INFO - Saving data
10-05-2021 10:06:14 - INFO - Wrote /data/scisofttmp/paleo/nabu_end2end_tests/stylo/rec/TEST_YS01S201_BLISSMAP_SYS01S201_8scans.nx_0000_0004/TEST_YS01S201_BLISSMAP_SYS01S201_8scans.nx_0000_0004_0280.hdf5
10-05-2021 10:06:14 - INFO - Saving histogram
10-05-2021 10:06:14 - INFO -
Processing sub-volume (314, 414)
10-05-2021 10:06:14 - INFO - Reading data
10-05-2021 10:10:01 - INFO - Read subvolume (7000, 100, 2560) (7.17 GB) in 227.06 s: 0.032 GB/s
10-05-2021 10:10:02 - INFO - Applying flat-field
10-05-2021 10:10:02 - INFO - Applying double flat-field
10-05-2021 10:10:03 - INFO - Performing phase retrieval
10-05-2021 10:10:05 - INFO - Taking logarithm
10-05-2021 10:10:07 - INFO - Dumping data to /data/scisofttmp/paleo/nabu_end2end_tests/stylo/rec/sinogram_TEST_YS01S201_BLISSMAP_SYS01S201_8scans.nx_0000_0004/sinogram_TEST_YS01S201_BLISSMAP_SYS01S201_8scans.nx_0000_0004_0336.hdf5
10-05-2021 10:10:18 - INFO - Building sinograms
10-05-2021 10:10:18 - INFO - Reconstruction
10-05-2021 10:10:26 - INFO - Computing histogram
10-05-2021 10:10:26 - INFO - Saving data
10-05-2021 10:10:34 - INFO - Wrote /data/scisofttmp/paleo/nabu_end2end_tests/stylo/rec/TEST_YS01S201_BLISSMAP_SYS01S201_8scans.nx_0000_0004/TEST_YS01S201_BLISSMAP_SYS01S201_8scans.nx_0000_0004_0336.hdf5
10-05-2021 10:10:34 - INFO - Saving histogram
10-05-2021 10:10:34 - INFO -
Processing sub-volume (370, 470)
10-05-2021 10:10:34 - INFO - Reading data
10-05-2021 10:11:37 - INFO - Read subvolume (7000, 100, 2560) (7.17 GB) in 62.56 s: 0.115 GB/s
10-05-2021 10:11:38 - INFO - Applying flat-field
10-05-2021 10:11:38 - INFO - Applying double flat-field
10-05-2021 10:11:39 - INFO - Performing phase retrieval
10-05-2021 10:11:41 - INFO - Taking logarithm
10-05-2021 10:11:42 - INFO - Dumping data to /data/scisofttmp/paleo/nabu_end2end_tests/stylo/rec/sinogram_TEST_YS01S201_BLISSMAP_SYS01S201_8scans.nx_0000_0004/sinogram_TEST_YS01S201_BLISSMAP_SYS01S201_8scans.nx_0000_0004_0392.hdf5
10-05-2021 10:11:52 - INFO - Building sinograms
10-05-2021 10:11:52 - INFO - Reconstruction
10-05-2021 10:12:00 - INFO - Computing histogram
10-05-2021 10:12:00 - INFO - Saving data
10-05-2021 10:12:08 - INFO - Wrote /data/scisofttmp/paleo/nabu_end2end_tests/stylo/rec/TEST_YS01S201_BLISSMAP_SYS01S201_8scans.nx_0000_0004/TEST_YS01S201_BLISSMAP_SYS01S201_8scans.nx_0000_0004_0392.hdf5
10-05-2021 10:12:08 - INFO - Saving histogram
10-05-2021 10:12:08 - INFO -
Processing sub-volume (426, 526)
10-05-2021 10:12:08 - INFO - Reading data
10-05-2021 10:13:30 - INFO - Read subvolume (7000, 100, 2560) (7.17 GB) in 81.78 s: 0.088 GB/s
10-05-2021 10:13:31 - INFO - Applying flat-field
10-05-2021 10:13:31 - INFO - Applying double flat-field
10-05-2021 10:13:32 - INFO - Performing phase retrieval
10-05-2021 10:13:34 - INFO - Taking logarithm
10-05-2021 10:13:35 - INFO - Dumping data to /data/scisofttmp/paleo/nabu_end2end_tests/stylo/rec/sinogram_TEST_YS01S201_BLISSMAP_SYS01S201_8scans.nx_0000_0004/sinogram_TEST_YS01S201_BLISSMAP_SYS01S201_8scans.nx_0000_0004_0448.hdf5
10-05-2021 10:13:47 - INFO - Building sinograms
10-05-2021 10:13:47 - INFO - Reconstruction
10-05-2021 10:13:55 - INFO - Computing histogram
10-05-2021 10:13:55 - INFO - Saving data
10-05-2021 10:14:02 - INFO - Wrote /data/scisofttmp/paleo/nabu_end2end_tests/stylo/rec/TEST_YS01S201_BLISSMAP_SYS01S201_8scans.nx_0000_0004/TEST_YS01S201_BLISSMAP_SYS01S201_8scans.nx_0000_0004_0448.hdf5
10-05-2021 10:14:02 - INFO - Saving histogram
10-05-2021 10:14:02 - INFO -
Processing sub-volume (482, 582)
10-05-2021 10:14:02 - INFO - Reading data
10-05-2021 10:15:17 - INFO - Read subvolume (7000, 100, 2560) (7.17 GB) in 75.03 s: 0.096 GB/s
10-05-2021 10:15:18 - INFO - Applying flat-field
10-05-2021 10:15:18 - INFO - Applying double flat-field
10-05-2021 10:15:19 - INFO - Performing phase retrieval
10-05-2021 10:15:21 - INFO - Taking logarithm
10-05-2021 10:15:23 - INFO - Dumping data to /data/scisofttmp/paleo/nabu_end2end_tests/stylo/rec/sinogram_TEST_YS01S201_BLISSMAP_SYS01S201_8scans.nx_0000_0004/sinogram_TEST_YS01S201_BLISSMAP_SYS01S201_8scans.nx_0000_0004_0504.hdf5
10-05-2021 10:15:34 - INFO - Building sinograms
10-05-2021 10:15:34 - INFO - Reconstruction
10-05-2021 10:15:42 - INFO - Computing histogram
10-05-2021 10:15:42 - INFO - Saving data
10-05-2021 10:15:49 - INFO - Wrote /data/scisofttmp/paleo/nabu_end2end_tests/stylo/rec/TEST_YS01S201_BLISSMAP_SYS01S201_8scans.nx_0000_0004/TEST_YS01S201_BLISSMAP_SYS01S201_8scans.nx_0000_0004_0504.hdf5
10-05-2021 10:15:49 - INFO - Saving histogram
10-05-2021 10:15:49 - INFO -
Processing sub-volume (538, 638)
10-05-2021 10:15:49 - INFO - Reading data
10-05-2021 10:17:07 - INFO - Read subvolume (7000, 100, 2560) (7.17 GB) in 78.60 s: 0.091 GB/s
10-05-2021 10:17:09 - INFO - Applying flat-field
10-05-2021 10:17:09 - INFO - Applying double flat-field
10-05-2021 10:17:10 - INFO - Performing phase retrieval
10-05-2021 10:17:11 - INFO - Taking logarithm
10-05-2021 10:17:14 - INFO - Dumping data to /data/scisofttmp/paleo/nabu_end2end_tests/stylo/rec/sinogram_TEST_YS01S201_BLISSMAP_SYS01S201_8scans.nx_0000_0004/sinogram_TEST_YS01S201_BLISSMAP_SYS01S201_8scans.nx_0000_0004_0560.hdf5
10-05-2021 10:17:24 - INFO - Building sinograms
10-05-2021 10:17:24 - INFO - Reconstruction
10-05-2021 10:17:32 - INFO - Computing histogram
10-05-2021 10:17:32 - INFO - Saving data
10-05-2021 10:17:39 - INFO - Wrote /data/scisofttmp/paleo/nabu_end2end_tests/stylo/rec/TEST_YS01S201_BLISSMAP_SYS01S201_8scans.nx_0000_0004/TEST_YS01S201_BLISSMAP_SYS01S201_8scans.nx_0000_0004_0560.hdf5
10-05-2021 10:17:39 - INFO - Saving histogram
10-05-2021 10:17:39 - INFO -
Processing sub-volume (594, 694)
10-05-2021 10:17:40 - INFO - Reading data
10-05-2021 10:17:58 - INFO - Read subvolume (7000, 100, 2560) (7.17 GB) in 17.96 s: 0.399 GB/s
10-05-2021 10:17:59 - INFO - Applying flat-field
10-05-2021 10:17:59 - INFO - Applying double flat-field
10-05-2021 10:18:00 - INFO - Performing phase retrieval
10-05-2021 10:18:02 - INFO - Taking logarithm
10-05-2021 10:18:03 - INFO - Dumping data to /data/scisofttmp/paleo/nabu_end2end_tests/stylo/rec/sinogram_TEST_YS01S201_BLISSMAP_SYS01S201_8scans.nx_0000_0004/sinogram_TEST_YS01S201_BLISSMAP_SYS01S201_8scans.nx_0000_0004_0616.hdf5
10-05-2021 10:18:14 - INFO - Building sinograms
10-05-2021 10:18:14 - INFO - Reconstruction
10-05-2021 10:18:21 - INFO - Computing histogram
10-05-2021 10:18:22 - INFO - Saving data
10-05-2021 10:18:28 - INFO - Wrote /data/scisofttmp/paleo/nabu_end2end_tests/stylo/rec/TEST_YS01S201_BLISSMAP_SYS01S201_8scans.nx_0000_0004/TEST_YS01S201_BLISSMAP_SYS01S201_8scans.nx_0000_0004_0616.hdf5
10-05-2021 10:18:28 - INFO - Saving histogram
10-05-2021 10:18:29 - INFO -
Processing sub-volume (650, 750)
10-05-2021 10:18:29 - INFO - Reading data
10-05-2021 10:18:36 - INFO - Read subvolume (7000, 100, 2560) (7.17 GB) in 7.64 s: 0.938 GB/s
10-05-2021 10:18:37 - INFO - Applying flat-field
10-05-2021 10:18:37 - INFO - Applying double flat-field
10-05-2021 10:18:38 - INFO - Performing phase retrieval
10-05-2021 10:18:40 - INFO - Taking logarithm
10-05-2021 10:18:42 - INFO - Dumping data to /data/scisofttmp/paleo/nabu_end2end_tests/stylo/rec/sinogram_TEST_YS01S201_BLISSMAP_SYS01S201_8scans.nx_0000_0004/sinogram_TEST_YS01S201_BLISSMAP_SYS01S201_8scans.nx_0000_0004_0672.hdf5
10-05-2021 10:18:53 - INFO - Building sinograms
10-05-2021 10:18:53 - INFO - Reconstruction
10-05-2021 10:19:02 - INFO - Computing histogram
10-05-2021 10:19:02 - INFO - Saving data
10-05-2021 10:19:10 - INFO - Wrote /data/scisofttmp/paleo/nabu_end2end_tests/stylo/rec/TEST_YS01S201_BLISSMAP_SYS01S201_8scans.nx_0000_0004/TEST_YS01S201_BLISSMAP_SYS01S201_8scans.nx_0000_0004_0672.hdf5
10-05-2021 10:19:10 - INFO - Saving histogram
10-05-2021 10:19:10 - INFO -
Processing sub-volume (706, 806)
10-05-2021 10:19:10 - INFO - Reading data
10-05-2021 10:19:22 - INFO - Read subvolume (7000, 100, 2560) (7.17 GB) in 11.56 s: 0.620 GB/s
10-05-2021 10:19:23 - INFO - Applying flat-field
10-05-2021 10:19:23 - INFO - Applying double flat-field
10-05-2021 10:19:24 - INFO - Performing phase retrieval
10-05-2021 10:19:26 - INFO - Taking logarithm
10-05-2021 10:19:27 - INFO - Dumping data to /data/scisofttmp/paleo/nabu_end2end_tests/stylo/rec/sinogram_TEST_YS01S201_BLISSMAP_SYS01S201_8scans.nx_0000_0004/sinogram_TEST_YS01S201_BLISSMAP_SYS01S201_8scans.nx_0000_0004_0728.hdf5
10-05-2021 10:19:38 - INFO - Building sinograms
10-05-2021 10:19:38 - INFO - Reconstruction
10-05-2021 10:19:46 - INFO - Computing histogram
10-05-2021 10:19:46 - INFO - Saving data
10-05-2021 10:19:53 - INFO - Wrote /data/scisofttmp/paleo/nabu_end2end_tests/stylo/rec/TEST_YS01S201_BLISSMAP_SYS01S201_8scans.nx_0000_0004/TEST_YS01S201_BLISSMAP_SYS01S201_8scans.nx_0000_0004_0728.hdf5
10-05-2021 10:19:53 - INFO - Saving histogram
10-05-2021 10:19:53 - INFO -
Processing sub-volume (762, 862)
10-05-2021 10:19:53 - INFO - Reading data
10-05-2021 10:22:13 - INFO - Read subvolume (7000, 100, 2560) (7.17 GB) in 140.08 s: 0.051 GB/s
10-05-2021 10:22:14 - INFO - Applying flat-field
10-05-2021 10:22:14 - INFO - Applying double flat-field
10-05-2021 10:22:15 - INFO - Performing phase retrieval
10-05-2021 10:22:17 - INFO - Taking logarithm
10-05-2021 10:22:19 - INFO - Dumping data to /data/scisofttmp/paleo/nabu_end2end_tests/stylo/rec/sinogram_TEST_YS01S201_BLISSMAP_SYS01S201_8scans.nx_0000_0004/sinogram_TEST_YS01S201_BLISSMAP_SYS01S201_8scans.nx_0000_0004_0784.hdf5
10-05-2021 10:22:29 - INFO - Building sinograms
10-05-2021 10:22:29 - INFO - Reconstruction
10-05-2021 10:22:37 - INFO - Computing histogram
10-05-2021 10:22:37 - INFO - Saving data
10-05-2021 10:22:43 - INFO - Wrote /data/scisofttmp/paleo/nabu_end2end_tests/stylo/rec/TEST_YS01S201_BLISSMAP_SYS01S201_8scans.nx_0000_0004/TEST_YS01S201_BLISSMAP_SYS01S201_8scans.nx_0000_0004_0784.hdf5
10-05-2021 10:22:43 - INFO - Saving histogram
10-05-2021 10:22:44 - INFO -
Processing sub-volume (818, 918)
10-05-2021 10:22:44 - INFO - Reading data
10-05-2021 10:26:29 - INFO - Read subvolume (7000, 100, 2560) (7.17 GB) in 225.26 s: 0.032 GB/s
10-05-2021 10:26:30 - INFO - Applying flat-field
10-05-2021 10:26:30 - INFO - Applying double flat-field
10-05-2021 10:26:31 - INFO - Performing phase retrieval
10-05-2021 10:26:33 - INFO - Taking logarithm
10-05-2021 10:26:35 - INFO - Dumping data to /data/scisofttmp/paleo/nabu_end2end_tests/stylo/rec/sinogram_TEST_YS01S201_BLISSMAP_SYS01S201_8scans.nx_0000_0004/sinogram_TEST_YS01S201_BLISSMAP_SYS01S201_8scans.nx_0000_0004_0840.hdf5
10-05-2021 10:26:48 - INFO - Building sinograms
10-05-2021 10:26:48 - INFO - Reconstruction
10-05-2021 10:26:56 - INFO - Computing histogram
10-05-2021 10:26:56 - INFO - Saving data
10-05-2021 10:27:03 - INFO - Wrote /data/scisofttmp/paleo/nabu_end2end_tests/stylo/rec/TEST_YS01S201_BLISSMAP_SYS01S201_8scans.nx_0000_0004/TEST_YS01S201_BLISSMAP_SYS01S201_8scans.nx_0000_0004_0840.hdf5
10-05-2021 10:27:03 - INFO - Saving histogram
10-05-2021 10:27:03 - INFO -
Processing sub-volume (874, 974)
10-05-2021 10:27:03 - INFO - Reading data
10-05-2021 10:28:59 - INFO - Read subvolume (7000, 100, 2560) (7.17 GB) in 115.20 s: 0.062 GB/s
10-05-2021 10:29:00 - INFO - Applying flat-field
10-05-2021 10:29:00 - INFO - Applying double flat-field
10-05-2021 10:29:01 - INFO - Performing phase retrieval
10-05-2021 10:29:03 - INFO - Taking logarithm
10-05-2021 10:29:05 - INFO - Dumping data to /data/scisofttmp/paleo/nabu_end2end_tests/stylo/rec/sinogram_TEST_YS01S201_BLISSMAP_SYS01S201_8scans.nx_0000_0004/sinogram_TEST_YS01S201_BLISSMAP_SYS01S201_8scans.nx_0000_0004_0896.hdf5
10-05-2021 10:29:17 - INFO - Building sinograms
10-05-2021 10:29:17 - INFO - Reconstruction
10-05-2021 10:29:24 - INFO - Computing histogram
10-05-2021 10:29:24 - INFO - Saving data
10-05-2021 10:29:31 - INFO - Wrote /data/scisofttmp/paleo/nabu_end2end_tests/stylo/rec/TEST_YS01S201_BLISSMAP_SYS01S201_8scans.nx_0000_0004/TEST_YS01S201_BLISSMAP_SYS01S201_8scans.nx_0000_0004_0896.hdf5
10-05-2021 10:29:31 - INFO - Saving histogram
10-05-2021 10:29:31 - INFO -
Processing sub-volume (930, 1030)
10-05-2021 10:29:31 - INFO - Reading data
10-05-2021 10:30:19 - INFO - Read subvolume (7000, 100, 2560) (7.17 GB) in 47.71 s: 0.150 GB/s
10-05-2021 10:30:20 - INFO - Applying flat-field
10-05-2021 10:30:20 - INFO - Applying double flat-field
10-05-2021 10:30:21 - INFO - Performing phase retrieval
10-05-2021 10:30:23 - INFO - Taking logarithm
10-05-2021 10:30:25 - INFO - Dumping data to /data/scisofttmp/paleo/nabu_end2end_tests/stylo/rec/sinogram_TEST_YS01S201_BLISSMAP_SYS01S201_8scans.nx_0000_0004/sinogram_TEST_YS01S201_BLISSMAP_SYS01S201_8scans.nx_0000_0004_0952.hdf5
10-05-2021 10:30:37 - INFO - Building sinograms
10-05-2021 10:30:37 - INFO - Reconstruction
10-05-2021 10:30:45 - INFO - Computing histogram
10-05-2021 10:30:45 - INFO - Saving data
10-05-2021 10:30:51 - INFO - Wrote /data/scisofttmp/paleo/nabu_end2end_tests/stylo/rec/TEST_YS01S201_BLISSMAP_SYS01S201_8scans.nx_0000_0004/TEST_YS01S201_BLISSMAP_SYS01S201_8scans.nx_0000_0004_0952.hdf5
10-05-2021 10:30:51 - INFO - Saving histogram
10-05-2021 10:30:52 - INFO -
Processing sub-volume (986, 1086)
10-05-2021 10:30:52 - INFO - Reading data
10-05-2021 10:31:28 - INFO - Read subvolume (7000, 100, 2560) (7.17 GB) in 36.07 s: 0.199 GB/s
10-05-2021 10:31:29 - INFO - Applying flat-field
10-05-2021 10:31:29 - INFO - Applying double flat-field
10-05-2021 10:31:30 - INFO - Performing phase retrieval
10-05-2021 10:31:32 - INFO - Taking logarithm
10-05-2021 10:31:33 - INFO - Dumping data to /data/scisofttmp/paleo/nabu_end2end_tests/stylo/rec/sinogram_TEST_YS01S201_BLISSMAP_SYS01S201_8scans.nx_0000_0004/sinogram_TEST_YS01S201_BLISSMAP_SYS01S201_8scans.nx_0000_0004_1008.hdf5
10-05-2021 10:31:45 - INFO - Building sinograms
10-05-2021 10:31:45 - INFO - Reconstruction
10-05-2021 10:31:53 - INFO - Computing histogram
10-05-2021 10:31:53 - INFO - Saving data
10-05-2021 10:32:00 - INFO - Wrote /data/scisofttmp/paleo/nabu_end2end_tests/stylo/rec/TEST_YS01S201_BLISSMAP_SYS01S201_8scans.nx_0000_0004/TEST_YS01S201_BLISSMAP_SYS01S201_8scans.nx_0000_0004_1008.hdf5
10-05-2021 10:32:00 - INFO - Saving histogram
10-05-2021 10:32:01 - INFO -
Processing sub-volume (1042, 1142)
10-05-2021 10:32:01 - INFO - Reading data
10-05-2021 10:32:12 - INFO - Read subvolume (7000, 100, 2560) (7.17 GB) in 11.51 s: 0.623 GB/s
10-05-2021 10:32:13 - INFO - Applying flat-field
10-05-2021 10:32:13 - INFO - Applying double flat-field
10-05-2021 10:32:14 - INFO - Performing phase retrieval
10-05-2021 10:32:16 - INFO - Taking logarithm
10-05-2021 10:32:18 - INFO - Dumping data to /data/scisofttmp/paleo/nabu_end2end_tests/stylo/rec/sinogram_TEST_YS01S201_BLISSMAP_SYS01S201_8scans.nx_0000_0004/sinogram_TEST_YS01S201_BLISSMAP_SYS01S201_8scans.nx_0000_0004_1064.hdf5
10-05-2021 10:32:28 - INFO - Building sinograms
10-05-2021 10:32:28 - INFO - Reconstruction
10-05-2021 10:32:36 - INFO - Computing histogram
10-05-2021 10:32:36 - INFO - Saving data
10-05-2021 10:32:42 - INFO - Wrote /data/scisofttmp/paleo/nabu_end2end_tests/stylo/rec/TEST_YS01S201_BLISSMAP_SYS01S201_8scans.nx_0000_0004/TEST_YS01S201_BLISSMAP_SYS01S201_8scans.nx_0000_0004_1064.hdf5
10-05-2021 10:32:42 - INFO - Saving histogram
10-05-2021 10:32:43 - INFO -
Processing sub-volume (1098, 1198)
10-05-2021 10:32:43 - INFO - Reading data
10-05-2021 10:33:23 - INFO - Read subvolume (7000, 100, 2560) (7.17 GB) in 40.03 s: 0.179 GB/s
10-05-2021 10:33:24 - INFO - Applying flat-field
10-05-2021 10:33:24 - INFO - Applying double flat-field
10-05-2021 10:33:25 - INFO - Performing phase retrieval
10-05-2021 10:33:27 - INFO - Taking logarithm
10-05-2021 10:33:29 - INFO - Dumping data to /data/scisofttmp/paleo/nabu_end2end_tests/stylo/rec/sinogram_TEST_YS01S201_BLISSMAP_SYS01S201_8scans.nx_0000_0004/sinogram_TEST_YS01S201_BLISSMAP_SYS01S201_8scans.nx_0000_0004_1120.hdf5
10-05-2021 10:33:41 - INFO - Building sinograms
10-05-2021 10:33:41 - INFO - Reconstruction
10-05-2021 10:33:49 - INFO - Computing histogram
10-05-2021 10:33:49 - INFO - Saving data
10-05-2021 10:33:56 - INFO - Wrote /data/scisofttmp/paleo/nabu_end2end_tests/stylo/rec/TEST_YS01S201_BLISSMAP_SYS01S201_8scans.nx_0000_0004/TEST_YS01S201_BLISSMAP_SYS01S201_8scans.nx_0000_0004_1120.hdf5
10-05-2021 10:33:56 - INFO - Saving histogram
10-05-2021 10:33:56 - INFO -
Processing sub-volume (1154, 1254)
10-05-2021 10:33:56 - INFO - Reading data
10-05-2021 10:34:24 - INFO - Read subvolume (7000, 100, 2560) (7.17 GB) in 27.99 s: 0.256 GB/s
10-05-2021 10:34:25 - INFO - Applying flat-field
10-05-2021 10:34:25 - INFO - Applying double flat-field
10-05-2021 10:34:26 - INFO - Performing phase retrieval
10-05-2021 10:34:28 - INFO - Taking logarithm
10-05-2021 10:34:29 - INFO - Dumping data to /data/scisofttmp/paleo/nabu_end2end_tests/stylo/rec/sinogram_TEST_YS01S201_BLISSMAP_SYS01S201_8scans.nx_0000_0004/sinogram_TEST_YS01S201_BLISSMAP_SYS01S201_8scans.nx_0000_0004_1176.hdf5
10-05-2021 10:34:42 - INFO - Building sinograms
10-05-2021 10:34:42 - INFO - Reconstruction
10-05-2021 10:34:50 - INFO - Computing histogram
10-05-2021 10:34:50 - INFO - Saving data
10-05-2021 10:34:56 - INFO - Wrote /data/scisofttmp/paleo/nabu_end2end_tests/stylo/rec/TEST_YS01S201_BLISSMAP_SYS01S201_8scans.nx_0000_0004/TEST_YS01S201_BLISSMAP_SYS01S201_8scans.nx_0000_0004_1176.hdf5
10-05-2021 10:34:56 - INFO - Saving histogram
10-05-2021 10:34:57 - INFO -
Processing sub-volume (1210, 1310)
10-05-2021 10:34:57 - INFO - Reading data
10-05-2021 10:35:57 - INFO - Read subvolume (7000, 100, 2560) (7.17 GB) in 60.69 s: 0.118 GB/s
10-05-2021 10:35:59 - INFO - Applying flat-field
10-05-2021 10:35:59 - INFO - Applying double flat-field
10-05-2021 10:36:00 - INFO - Performing phase retrieval
10-05-2021 10:36:01 - INFO - Taking logarithm
10-05-2021 10:36:03 - INFO - Dumping data to /data/scisofttmp/paleo/nabu_end2end_tests/stylo/rec/sinogram_TEST_YS01S201_BLISSMAP_SYS01S201_8scans.nx_0000_0004/sinogram_TEST_YS01S201_BLISSMAP_SYS01S201_8scans.nx_0000_0004_1232.hdf5
10-05-2021 10:36:16 - INFO - Building sinograms
10-05-2021 10:36:16 - INFO - Reconstruction
10-05-2021 10:36:23 - INFO - Computing histogram
10-05-2021 10:36:23 - INFO - Saving data
10-05-2021 10:36:31 - INFO - Wrote /data/scisofttmp/paleo/nabu_end2end_tests/stylo/rec/TEST_YS01S201_BLISSMAP_SYS01S201_8scans.nx_0000_0004/TEST_YS01S201_BLISSMAP_SYS01S201_8scans.nx_0000_0004_1232.hdf5
10-05-2021 10:36:31 - INFO - Saving histogram
10-05-2021 10:36:31 - INFO -
Processing sub-volume (1266, 1366)
10-05-2021 10:36:31 - INFO - Reading data
10-05-2021 10:36:46 - INFO - Read subvolume (7000, 100, 2560) (7.17 GB) in 15.17 s: 0.473 GB/s
10-05-2021 10:36:47 - INFO - Applying flat-field
10-05-2021 10:36:47 - INFO - Applying double flat-field
10-05-2021 10:36:48 - INFO - Performing phase retrieval
10-05-2021 10:36:50 - INFO - Taking logarithm
10-05-2021 10:36:52 - INFO - Dumping data to /data/scisofttmp/paleo/nabu_end2end_tests/stylo/rec/sinogram_TEST_YS01S201_BLISSMAP_SYS01S201_8scans.nx_0000_0004/sinogram_TEST_YS01S201_BLISSMAP_SYS01S201_8scans.nx_0000_0004_1288.hdf5
10-05-2021 10:37:04 - INFO - Building sinograms
10-05-2021 10:37:04 - INFO - Reconstruction
10-05-2021 10:37:11 - INFO - Computing histogram
10-05-2021 10:37:11 - INFO - Saving data
10-05-2021 10:37:18 - INFO - Wrote /data/scisofttmp/paleo/nabu_end2end_tests/stylo/rec/TEST_YS01S201_BLISSMAP_SYS01S201_8scans.nx_0000_0004/TEST_YS01S201_BLISSMAP_SYS01S201_8scans.nx_0000_0004_1288.hdf5
10-05-2021 10:37:18 - INFO - Saving histogram
10-05-2021 10:37:18 - INFO -
Processing sub-volume (1322, 1422)
10-05-2021 10:37:18 - INFO - Reading data
10-05-2021 10:37:58 - INFO - Read subvolume (7000, 100, 2560) (7.17 GB) in 39.99 s: 0.179 GB/s
10-05-2021 10:37:59 - INFO - Applying flat-field
10-05-2021 10:37:59 - INFO - Applying double flat-field
10-05-2021 10:38:00 - INFO - Performing phase retrieval
10-05-2021 10:38:02 - INFO - Taking logarithm
10-05-2021 10:38:04 - INFO - Dumping data to /data/scisofttmp/paleo/nabu_end2end_tests/stylo/rec/sinogram_TEST_YS01S201_BLISSMAP_SYS01S201_8scans.nx_0000_0004/sinogram_TEST_YS01S201_BLISSMAP_SYS01S201_8scans.nx_0000_0004_1344.hdf5
10-05-2021 10:38:17 - INFO - Building sinograms
10-05-2021 10:38:17 - INFO - Reconstruction
10-05-2021 10:38:25 - INFO - Computing histogram
10-05-2021 10:38:25 - INFO - Saving data
10-05-2021 10:38:31 - INFO - Wrote /data/scisofttmp/paleo/nabu_end2end_tests/stylo/rec/TEST_YS01S201_BLISSMAP_SYS01S201_8scans.nx_0000_0004/TEST_YS01S201_BLISSMAP_SYS01S201_8scans.nx_0000_0004_1344.hdf5
10-05-2021 10:38:31 - INFO - Saving histogram
10-05-2021 10:38:31 - INFO -
Processing sub-volume (1378, 1478)
10-05-2021 10:38:32 - INFO - Reading data
10-05-2021 10:39:24 - INFO - Read subvolume (7000, 100, 2560) (7.17 GB) in 52.31 s: 0.137 GB/s
10-05-2021 10:39:25 - INFO - Applying flat-field
10-05-2021 10:39:25 - INFO - Applying double flat-field
10-05-2021 10:39:26 - INFO - Performing phase retrieval
10-05-2021 10:39:28 - INFO - Taking logarithm
10-05-2021 10:39:30 - INFO - Dumping data to /data/scisofttmp/paleo/nabu_end2end_tests/stylo/rec/sinogram_TEST_YS01S201_BLISSMAP_SYS01S201_8scans.nx_0000_0004/sinogram_TEST_YS01S201_BLISSMAP_SYS01S201_8scans.nx_0000_0004_1400.hdf5
10-05-2021 10:39:41 - INFO - Building sinograms
10-05-2021 10:39:41 - INFO - Reconstruction
10-05-2021 10:39:49 - INFO - Computing histogram
10-05-2021 10:39:49 - INFO - Saving data
10-05-2021 10:39:56 - INFO - Wrote /data/scisofttmp/paleo/nabu_end2end_tests/stylo/rec/TEST_YS01S201_BLISSMAP_SYS01S201_8scans.nx_0000_0004/TEST_YS01S201_BLISSMAP_SYS01S201_8scans.nx_0000_0004_1400.hdf5
10-05-2021 10:39:56 - INFO - Saving histogram
10-05-2021 10:39:56 - INFO -
Processing sub-volume (1434, 1534)
10-05-2021 10:39:57 - INFO - Reading data
10-05-2021 10:40:28 - INFO - Read subvolume (7000, 100, 2560) (7.17 GB) in 31.78 s: 0.226 GB/s
10-05-2021 10:40:30 - INFO - Applying flat-field
10-05-2021 10:40:30 - INFO - Applying double flat-field
10-05-2021 10:40:30 - INFO - Performing phase retrieval
10-05-2021 10:40:32 - INFO - Taking logarithm
10-05-2021 10:40:34 - INFO - Dumping data to /data/scisofttmp/paleo/nabu_end2end_tests/stylo/rec/sinogram_TEST_YS01S201_BLISSMAP_SYS01S201_8scans.nx_0000_0004/sinogram_TEST_YS01S201_BLISSMAP_SYS01S201_8scans.nx_0000_0004_1456.hdf5
10-05-2021 10:40:47 - INFO - Building sinograms
10-05-2021 10:40:47 - INFO - Reconstruction
10-05-2021 10:40:54 - INFO - Computing histogram
10-05-2021 10:40:54 - INFO - Saving data
10-05-2021 10:41:01 - INFO - Wrote /data/scisofttmp/paleo/nabu_end2end_tests/stylo/rec/TEST_YS01S201_BLISSMAP_SYS01S201_8scans.nx_0000_0004/TEST_YS01S201_BLISSMAP_SYS01S201_8scans.nx_0000_0004_1456.hdf5
10-05-2021 10:41:01 - INFO - Saving histogram
10-05-2021 10:41:01 - INFO -
Processing sub-volume (1490, 1590)
10-05-2021 10:41:01 - INFO - Reading data
10-05-2021 10:41:35 - INFO - Read subvolume (7000, 100, 2560) (7.17 GB) in 33.49 s: 0.214 GB/s
10-05-2021 10:41:36 - INFO - Applying flat-field
10-05-2021 10:41:36 - INFO - Applying double flat-field
10-05-2021 10:41:37 - INFO - Performing phase retrieval
10-05-2021 10:41:39 - INFO - Taking logarithm
10-05-2021 10:41:40 - INFO - Dumping data to /data/scisofttmp/paleo/nabu_end2end_tests/stylo/rec/sinogram_TEST_YS01S201_BLISSMAP_SYS01S201_8scans.nx_0000_0004/sinogram_TEST_YS01S201_BLISSMAP_SYS01S201_8scans.nx_0000_0004_1512.hdf5
10-05-2021 10:41:53 - INFO - Building sinograms
10-05-2021 10:41:53 - INFO - Reconstruction
10-05-2021 10:42:01 - INFO - Computing histogram
10-05-2021 10:42:01 - INFO - Saving data
10-05-2021 10:42:07 - INFO - Wrote /data/scisofttmp/paleo/nabu_end2end_tests/stylo/rec/TEST_YS01S201_BLISSMAP_SYS01S201_8scans.nx_0000_0004/TEST_YS01S201_BLISSMAP_SYS01S201_8scans.nx_0000_0004_1512.hdf5
10-05-2021 10:42:07 - INFO - Saving histogram
10-05-2021 10:42:07 - INFO -
Processing sub-volume (1546, 1646)
10-05-2021 10:42:07 - INFO - Reading data
10-05-2021 10:42:35 - INFO - Read subvolume (7000, 100, 2560) (7.17 GB) in 27.05 s: 0.265 GB/s
10-05-2021 10:42:36 - INFO - Applying flat-field
10-05-2021 10:42:36 - INFO - Applying double flat-field
10-05-2021 10:42:37 - INFO - Performing phase retrieval
10-05-2021 10:42:39 - INFO - Taking logarithm
10-05-2021 10:42:40 - INFO - Dumping data to /data/scisofttmp/paleo/nabu_end2end_tests/stylo/rec/sinogram_TEST_YS01S201_BLISSMAP_SYS01S201_8scans.nx_0000_0004/sinogram_TEST_YS01S201_BLISSMAP_SYS01S201_8scans.nx_0000_0004_1568.hdf5
10-05-2021 10:42:51 - INFO - Building sinograms
10-05-2021 10:42:51 - INFO - Reconstruction
10-05-2021 10:42:59 - INFO - Computing histogram
10-05-2021 10:42:59 - INFO - Saving data
10-05-2021 10:43:06 - INFO - Wrote /data/scisofttmp/paleo/nabu_end2end_tests/stylo/rec/TEST_YS01S201_BLISSMAP_SYS01S201_8scans.nx_0000_0004/TEST_YS01S201_BLISSMAP_SYS01S201_8scans.nx_0000_0004_1568.hdf5
10-05-2021 10:43:06 - INFO - Saving histogram
10-05-2021 10:43:06 - INFO -
Processing sub-volume (1602, 1702)
10-05-2021 10:43:06 - INFO - Reading data
10-05-2021 10:43:27 - INFO - Read subvolume (7000, 100, 2560) (7.17 GB) in 20.97 s: 0.342 GB/s
10-05-2021 10:43:28 - INFO - Applying flat-field
10-05-2021 10:43:28 - INFO - Applying double flat-field
10-05-2021 10:43:29 - INFO - Performing phase retrieval
10-05-2021 10:43:31 - INFO - Taking logarithm
10-05-2021 10:43:33 - INFO - Dumping data to /data/scisofttmp/paleo/nabu_end2end_tests/stylo/rec/sinogram_TEST_YS01S201_BLISSMAP_SYS01S201_8scans.nx_0000_0004/sinogram_TEST_YS01S201_BLISSMAP_SYS01S201_8scans.nx_0000_0004_1624.hdf5
10-05-2021 10:43:45 - INFO - Building sinograms
10-05-2021 10:43:45 - INFO - Reconstruction
10-05-2021 10:43:53 - INFO - Computing histogram
10-05-2021 10:43:53 - INFO - Saving data
10-05-2021 10:44:00 - INFO - Wrote /data/scisofttmp/paleo/nabu_end2end_tests/stylo/rec/TEST_YS01S201_BLISSMAP_SYS01S201_8scans.nx_0000_0004/TEST_YS01S201_BLISSMAP_SYS01S201_8scans.nx_0000_0004_1624.hdf5
10-05-2021 10:44:00 - INFO - Saving histogram
10-05-2021 10:44:00 - INFO -
Processing sub-volume (1658, 1758)
10-05-2021 10:44:00 - INFO - Reading data
10-05-2021 10:44:56 - INFO - Read subvolume (7000, 100, 2560) (7.17 GB) in 55.68 s: 0.129 GB/s
10-05-2021 10:44:57 - INFO - Applying flat-field
10-05-2021 10:44:57 - INFO - Applying double flat-field
10-05-2021 10:44:58 - INFO - Performing phase retrieval
10-05-2021 10:45:00 - INFO - Taking logarithm
10-05-2021 10:45:01 - INFO - Dumping data to /data/scisofttmp/paleo/nabu_end2end_tests/stylo/rec/sinogram_TEST_YS01S201_BLISSMAP_SYS01S201_8scans.nx_0000_0004/sinogram_TEST_YS01S201_BLISSMAP_SYS01S201_8scans.nx_0000_0004_1680.hdf5
10-05-2021 10:45:13 - INFO - Building sinograms
10-05-2021 10:45:13 - INFO - Reconstruction
10-05-2021 10:45:20 - INFO - Computing histogram
10-05-2021 10:45:20 - INFO - Saving data
10-05-2021 10:45:28 - INFO - Wrote /data/scisofttmp/paleo/nabu_end2end_tests/stylo/rec/TEST_YS01S201_BLISSMAP_SYS01S201_8scans.nx_0000_0004/TEST_YS01S201_BLISSMAP_SYS01S201_8scans.nx_0000_0004_1680.hdf5
10-05-2021 10:45:28 - INFO - Saving histogram
10-05-2021 10:45:28 - INFO -
Processing sub-volume (1714, 1814)
10-05-2021 10:45:28 - INFO - Reading data
10-05-2021 10:45:49 - INFO - Read subvolume (7000, 100, 2560) (7.17 GB) in 21.47 s: 0.334 GB/s
10-05-2021 10:45:50 - INFO - Applying flat-field
10-05-2021 10:45:50 - INFO - Applying double flat-field
10-05-2021 10:45:51 - INFO - Performing phase retrieval
10-05-2021 10:45:53 - INFO - Taking logarithm
10-05-2021 10:45:55 - INFO - Dumping data to /data/scisofttmp/paleo/nabu_end2end_tests/stylo/rec/sinogram_TEST_YS01S201_BLISSMAP_SYS01S201_8scans.nx_0000_0004/sinogram_TEST_YS01S201_BLISSMAP_SYS01S201_8scans.nx_0000_0004_1736.hdf5
10-05-2021 10:46:05 - INFO - Building sinograms
10-05-2021 10:46:05 - INFO - Reconstruction
10-05-2021 10:46:15 - INFO - Computing histogram
10-05-2021 10:46:15 - INFO - Saving data
10-05-2021 10:46:22 - INFO - Wrote /data/scisofttmp/paleo/nabu_end2end_tests/stylo/rec/TEST_YS01S201_BLISSMAP_SYS01S201_8scans.nx_0000_0004/TEST_YS01S201_BLISSMAP_SYS01S201_8scans.nx_0000_0004_1736.hdf5
10-05-2021 10:46:22 - INFO - Saving histogram
10-05-2021 10:46:22 - INFO -
Processing sub-volume (1770, 1870)
10-05-2021 10:46:22 - INFO - Reading data
10-05-2021 10:47:05 - INFO - Read subvolume (7000, 100, 2560) (7.17 GB) in 42.39 s: 0.169 GB/s
10-05-2021 10:47:06 - INFO - Applying flat-field
10-05-2021 10:47:06 - INFO - Applying double flat-field
10-05-2021 10:47:07 - INFO - Performing phase retrieval
10-05-2021 10:47:09 - INFO - Taking logarithm
10-05-2021 10:47:11 - INFO - Dumping data to /data/scisofttmp/paleo/nabu_end2end_tests/stylo/rec/sinogram_TEST_YS01S201_BLISSMAP_SYS01S201_8scans.nx_0000_0004/sinogram_TEST_YS01S201_BLISSMAP_SYS01S201_8scans.nx_0000_0004_1792.hdf5
10-05-2021 10:47:21 - INFO - Building sinograms
10-05-2021 10:47:21 - INFO - Reconstruction
10-05-2021 10:47:28 - INFO - Computing histogram
10-05-2021 10:47:28 - INFO - Saving data
10-05-2021 10:47:35 - INFO - Wrote /data/scisofttmp/paleo/nabu_end2end_tests/stylo/rec/TEST_YS01S201_BLISSMAP_SYS01S201_8scans.nx_0000_0004/TEST_YS01S201_BLISSMAP_SYS01S201_8scans.nx_0000_0004_1792.hdf5
10-05-2021 10:47:35 - INFO - Saving histogram
10-05-2021 10:47:35 - INFO -
Processing sub-volume (1826, 1926)
10-05-2021 10:47:36 - INFO - Reading data
10-05-2021 10:48:14 - INFO - Read subvolume (7000, 100, 2560) (7.17 GB) in 38.29 s: 0.187 GB/s
10-05-2021 10:48:15 - INFO - Applying flat-field
10-05-2021 10:48:15 - INFO - Applying double flat-field
10-05-2021 10:48:16 - INFO - Performing phase retrieval
10-05-2021 10:48:18 - INFO - Taking logarithm
10-05-2021 10:48:20 - INFO - Dumping data to /data/scisofttmp/paleo/nabu_end2end_tests/stylo/rec/sinogram_TEST_YS01S201_BLISSMAP_SYS01S201_8scans.nx_0000_0004/sinogram_TEST_YS01S201_BLISSMAP_SYS01S201_8scans.nx_0000_0004_1848.hdf5
10-05-2021 10:48:31 - INFO - Building sinograms
10-05-2021 10:48:31 - INFO - Reconstruction
10-05-2021 10:48:38 - INFO - Computing histogram
10-05-2021 10:48:39 - INFO - Saving data
10-05-2021 10:48:46 - INFO - Wrote /data/scisofttmp/paleo/nabu_end2end_tests/stylo/rec/TEST_YS01S201_BLISSMAP_SYS01S201_8scans.nx_0000_0004/TEST_YS01S201_BLISSMAP_SYS01S201_8scans.nx_0000_0004_1848.hdf5
10-05-2021 10:48:46 - INFO - Saving histogram
10-05-2021 10:48:46 - INFO -
Processing sub-volume (1882, 1982)
10-05-2021 10:48:46 - INFO - Reading data
10-05-2021 10:49:18 - INFO - Read subvolume (7000, 100, 2560) (7.17 GB) in 31.34 s: 0.229 GB/s
10-05-2021 10:49:19 - INFO - Applying flat-field
10-05-2021 10:49:19 - INFO - Applying double flat-field
10-05-2021 10:49:20 - INFO - Performing phase retrieval
10-05-2021 10:49:22 - INFO - Taking logarithm
10-05-2021 10:49:23 - INFO - Dumping data to /data/scisofttmp/paleo/nabu_end2end_tests/stylo/rec/sinogram_TEST_YS01S201_BLISSMAP_SYS01S201_8scans.nx_0000_0004/sinogram_TEST_YS01S201_BLISSMAP_SYS01S201_8scans.nx_0000_0004_1904.hdf5
10-05-2021 10:49:35 - INFO - Building sinograms
10-05-2021 10:49:35 - INFO - Reconstruction
10-05-2021 10:49:43 - INFO - Computing histogram
10-05-2021 10:49:43 - INFO - Saving data
10-05-2021 10:49:50 - INFO - Wrote /data/scisofttmp/paleo/nabu_end2end_tests/stylo/rec/TEST_YS01S201_BLISSMAP_SYS01S201_8scans.nx_0000_0004/TEST_YS01S201_BLISSMAP_SYS01S201_8scans.nx_0000_0004_1904.hdf5
10-05-2021 10:49:50 - INFO - Saving histogram
10-05-2021 10:49:50 - INFO -
Processing sub-volume (1938, 2038)
10-05-2021 10:49:50 - INFO - Reading data
10-05-2021 10:51:42 - INFO - Read subvolume (7000, 100, 2560) (7.17 GB) in 112.52 s: 0.064 GB/s
10-05-2021 10:51:44 - INFO - Applying flat-field
10-05-2021 10:51:44 - INFO - Applying double flat-field
10-05-2021 10:51:45 - INFO - Performing phase retrieval
10-05-2021 10:51:46 - INFO - Taking logarithm
10-05-2021 10:51:49 - INFO - Dumping data to /data/scisofttmp/paleo/nabu_end2end_tests/stylo/rec/sinogram_TEST_YS01S201_BLISSMAP_SYS01S201_8scans.nx_0000_0004/sinogram_TEST_YS01S201_BLISSMAP_SYS01S201_8scans.nx_0000_0004_1960.hdf5
10-05-2021 10:52:02 - INFO - Building sinograms
10-05-2021 10:52:02 - INFO - Reconstruction
10-05-2021 10:52:09 - INFO - Computing histogram
10-05-2021 10:52:09 - INFO - Saving data
10-05-2021 10:52:17 - INFO - Wrote /data/scisofttmp/paleo/nabu_end2end_tests/stylo/rec/TEST_YS01S201_BLISSMAP_SYS01S201_8scans.nx_0000_0004/TEST_YS01S201_BLISSMAP_SYS01S201_8scans.nx_0000_0004_1960.hdf5
10-05-2021 10:52:17 - INFO - Saving histogram
10-05-2021 10:52:17 - INFO -
Processing sub-volume (1994, 2094)
10-05-2021 10:52:17 - INFO - Reading data
10-05-2021 10:54:36 - INFO - Read subvolume (7000, 100, 2560) (7.17 GB) in 138.53 s: 0.052 GB/s
10-05-2021 10:54:37 - INFO - Applying flat-field
10-05-2021 10:54:37 - INFO - Applying double flat-field
10-05-2021 10:54:38 - INFO - Performing phase retrieval
10-05-2021 10:54:40 - INFO - Taking logarithm
10-05-2021 10:54:42 - INFO - Dumping data to /data/scisofttmp/paleo/nabu_end2end_tests/stylo/rec/sinogram_TEST_YS01S201_BLISSMAP_SYS01S201_8scans.nx_0000_0004/sinogram_TEST_YS01S201_BLISSMAP_SYS01S201_8scans.nx_0000_0004_2016.hdf5
10-05-2021 10:54:54 - INFO - Building sinograms
10-05-2021 10:54:54 - INFO - Reconstruction
10-05-2021 10:55:02 - INFO - Computing histogram
10-05-2021 10:55:02 - INFO - Saving data
10-05-2021 10:55:09 - INFO - Wrote /data/scisofttmp/paleo/nabu_end2end_tests/stylo/rec/TEST_YS01S201_BLISSMAP_SYS01S201_8scans.nx_0000_0004/TEST_YS01S201_BLISSMAP_SYS01S201_8scans.nx_0000_0004_2016.hdf5
10-05-2021 10:55:09 - INFO - Saving histogram
10-05-2021 10:55:09 - INFO -
Processing sub-volume (2050, 2150)
10-05-2021 10:55:09 - INFO - Reading data
10-05-2021 10:55:34 - INFO - Read subvolume (7000, 100, 2560) (7.17 GB) in 24.86 s: 0.288 GB/s
10-05-2021 10:55:35 - INFO - Applying flat-field
10-05-2021 10:55:35 - INFO - Applying double flat-field
10-05-2021 10:55:36 - INFO - Performing phase retrieval
10-05-2021 10:55:38 - INFO - Taking logarithm
10-05-2021 10:55:39 - INFO - Dumping data to /data/scisofttmp/paleo/nabu_end2end_tests/stylo/rec/sinogram_TEST_YS01S201_BLISSMAP_SYS01S201_8scans.nx_0000_0004/sinogram_TEST_YS01S201_BLISSMAP_SYS01S201_8scans.nx_0000_0004_2072.hdf5
10-05-2021 10:55:52 - INFO - Building sinograms
10-05-2021 10:55:52 - INFO - Reconstruction
10-05-2021 10:56:00 - INFO - Computing histogram
10-05-2021 10:56:00 - INFO - Saving data
10-05-2021 10:56:07 - INFO - Wrote /data/scisofttmp/paleo/nabu_end2end_tests/stylo/rec/TEST_YS01S201_BLISSMAP_SYS01S201_8scans.nx_0000_0004/TEST_YS01S201_BLISSMAP_SYS01S201_8scans.nx_0000_0004_2072.hdf5
10-05-2021 10:56:07 - INFO - Saving histogram
10-05-2021 10:56:07 - INFO -
Processing sub-volume (2106, 2160)
10-05-2021 10:56:09 - INFO - Estimated center of rotation: 1298.75
10-05-2021 10:56:09 - INFO - Reading data
10-05-2021 10:56:18 - INFO - Read subvolume (7000, 54, 2560) (3.87 GB) in 8.66 s: 0.447 GB/s
10-05-2021 10:56:18 - INFO - Applying flat-field
10-05-2021 10:56:18 - INFO - Applying double flat-field
10-05-2021 10:56:19 - INFO - Performing phase retrieval
10-05-2021 10:56:21 - INFO - Taking logarithm
10-05-2021 10:56:22 - INFO - Dumping data to /data/scisofttmp/paleo/nabu_end2end_tests/stylo/rec/sinogram_TEST_YS01S201_BLISSMAP_SYS01S201_8scans.nx_0000_0004/sinogram_TEST_YS01S201_BLISSMAP_SYS01S201_8scans.nx_0000_0004_2128.hdf5
10-05-2021 10:56:31 - INFO - Building sinograms
10-05-2021 10:56:31 - INFO - Reconstruction
10-05-2021 10:56:35 - INFO - Computing histogram
10-05-2021 10:56:35 - INFO - Saving data
10-05-2021 10:56:41 - INFO - Wrote /data/scisofttmp/paleo/nabu_end2end_tests/stylo/rec/TEST_YS01S201_BLISSMAP_SYS01S201_8scans.nx_0000_0004/TEST_YS01S201_BLISSMAP_SYS01S201_8scans.nx_0000_0004_2128.hdf5
10-05-2021 10:56:41 - INFO - Saving histogram
10-05-2021 10:56:42 - WARNING - File /data/scisofttmp/paleo/nabu_end2end_tests/stylo/rec/sinogram_TEST_YS01S201_BLISSMAP_SYS01S201_8scans.nx_0000_0004.hdf5 already exists. Overwriting as requested in configuration file
10-05-2021 10:56:42 - INFO - Merging sinograms to /data/scisofttmp/paleo/nabu_end2end_tests/stylo/rec/sinogram_TEST_YS01S201_BLISSMAP_SYS01S201_8scans.nx_0000_0004.hdf5
10-05-2021 10:56:47 - WARNING - File /data/scisofttmp/paleo/nabu_end2end_tests/stylo/rec/TEST_YS01S201_BLISSMAP_SYS01S201_8scans.nx_0000_0004.hdf5 already exists. Overwriting as requested in configuration file
10-05-2021 10:56:47 - INFO - Merging reconstructions to /data/scisofttmp/paleo/nabu_end2end_tests/stylo/rec/TEST_YS01S201_BLISSMAP_SYS01S201_8scans.nx_0000_0004.hdf5
10-05-2021 10:56:52 - INFO - Merging histograms