Other pylint errors

pylint gives the following errors:

************* Module nabu.app.rotate
nabu/app/rotate.py:76:8: E1136: Value 'd_in' is unsubscriptable (unsubscriptable-object)
nabu/app/rotate.py:78:33: E1136: Value 'd_in' is unsubscriptable (unsubscriptable-object)
nabu/app/rotate.py:78:49: E1136: Value 'd_out' is unsubscriptable (unsubscriptable-object)
nabu/app/rotate.py:79:8: E1136: Value 'd_out' is unsubscriptable (unsubscriptable-object)
nabu/app/rotate.py:137:13: E1121: Too many positional arguments for function call (too-many-function-args)
nabu/app/rotate.py:138:15: E1121: Too many positional arguments for function call (too-many-function-args)
nabu/app/rotate.py:139:26: E1121: Too many positional arguments for function call (too-many-function-args)
************* Module nabu.preproc.ctf
nabu/preproc/ctf.py:74:32: E1126: Sequence index is not an int, slice, or instance with __index__ (invalid-sequence-index)
************* Module nabu.preproc.double_flatfield_cuda
nabu/preproc/double_flatfield_cuda.py:62:12: E1123: Unexpected keyword argument 'output' in function call (unexpected-keyword-arg)
************* Module nabu.pipeline.fullfield.chunked
nabu/pipeline/fullfield/chunked.py:370:29: E0602: Undefined variable 'options' (undefined-variable)
nabu/pipeline/fullfield/chunked.py:371:28: E0602: Undefined variable 'options' (undefined-variable)
************* Module nabu.resources.dataset_analyzer
nabu/resources/dataset_analyzer.py:86:31: E1102: self._scanner is not callable (not-callable)
nabu/resources/dataset_analyzer.py:359:44: E0601: Using variable 'angles' before assignment (used-before-assignment)
************* Module nabu.misc.histogram
nabu/misc/histogram.py:119:38: E1136: Value 'histogrammer.edges' is unsubscriptable (unsubscriptable-object)

Related: !223 (merged)