E2E test fails on "bamboo"
with 2021.2.0a3
and tomoscan 0.6.0
. Not sure if the NX file is not recognized anymore.
(nabu_dev) paleo@p9-01:/data/scisofttmp/paleo/nabu_end2end_tests/bamboo$ nabu bamboo_simple.conf --slice middle
/scisoft/tomotools_env/nabu/ubuntu20.04/cuda10.1.243-3/ppc64le/nabu_dev/lib/python3.8/site-packages/skcuda/cublas.py:284: UserWarning: creating CUBLAS context to get version number
warnings.warn('creating CUBLAS context to get version number')
Option 'nabu_config' was removed.
This is deprecated since version 2021.1.0 and will result in an error in futures versions
Option 'verbosity' was moved from section [about] to section [pipeline]
This is deprecated since version 2021.1.0 and will result in an error in futures versions
Traceback (most recent call last):
File "/scisoft/tomotools_env/nabu/ubuntu20.04/cuda10.1.243-3/ppc64le/nabu_dev/bin/nabu", line 8, in <module>
sys.exit(main())
File "/scisoft/tomotools_env/nabu/ubuntu20.04/cuda10.1.243-3/ppc64le/nabu_dev/lib/python3.8/site-packages/nabu/app/reconstruct.py", line 93, in main
proc = ProcessConfig(conf_dict=conf_dict, create_logger=logfile)
File "/scisoft/tomotools_env/nabu/ubuntu20.04/cuda10.1.243-3/ppc64le/nabu_dev/lib/python3.8/site-packages/nabu/pipeline/processconfig.py", line 75, in __init__
self._browse_dataset(dataset_info)
File "/scisoft/tomotools_env/nabu/ubuntu20.04/cuda10.1.243-3/ppc64le/nabu_dev/lib/python3.8/site-packages/nabu/pipeline/processconfig.py", line 171, in _browse_dataset
self.dataset_info = analyze_dataset(
File "/scisoft/tomotools_env/nabu/ubuntu20.04/cuda10.1.243-3/ppc64le/nabu_dev/lib/python3.8/site-packages/nabu/resources/dataset_analyzer.py", line 315, in analyze_dataset
dataset_structure = dataset_analyzer_class(
File "/scisoft/tomotools_env/nabu/ubuntu20.04/cuda10.1.243-3/ppc64le/nabu_dev/lib/python3.8/site-packages/nabu/resources/dataset_analyzer.py", line 51, in __init__
self._init_dataset_scan()
File "/scisoft/tomotools_env/nabu/ubuntu20.04/cuda10.1.243-3/ppc64le/nabu_dev/lib/python3.8/site-packages/nabu/resources/dataset_analyzer.py", line 88, in _init_dataset_scan
self.projections = self.dataset_scanner.projections
File "/scisoft/tomotools_env/nabu/ubuntu20.04/cuda10.1.243-3/ppc64le/nabu_dev/lib/python3.8/site-packages/tomoscan/esrf/hdf5scan.py", line 504, in projections
if self.frames:
File "/scisoft/tomotools_env/nabu/ubuntu20.04/cuda10.1.243-3/ppc64le/nabu_dev/lib/python3.8/site-packages/tomoscan/esrf/hdf5scan.py", line 894, in frames
image_keys = self.image_key
File "/scisoft/tomotools_env/nabu/ubuntu20.04/cuda10.1.243-3/ppc64le/nabu_dev/lib/python3.8/site-packages/tomoscan/esrf/hdf5scan.py", line 672, in image_key
return self._get_generic_key("_image_keys", self.nexus_path.IMG_KEY_PATH)
AttributeError: 'NoneType' object has no attribute 'IMG_KEY_PATH'