NPY writer: result file overwriteen by each sub-volume reconstruction
It looks like each sub volume is wrote on the same .npy file. Which end with an overwrite each time and we can only access to the last sub module.
Processing sub-volume (308, 658)
DEBUG:nabu:Destroying pipeline instance and releasing memory
DEBUG:nabu:Creating a new pipeline object
DEBUG:nabu:Data shape for flatfield is (1500, 350, 2048)
DEBUG:nabu:Data shape for ccd_correction is (350, 2048)
DEBUG:nabu:Data shape for phase is (350, 2048)
DEBUG:nabu:Data shape for take_log is (1500, 322, 2048)
DEBUG:nabu:Data shape for build_sino is (1500, 322, 2048)
DEBUG:nabu:Allocating recs: (322, 2048, 2048)
DEBUG:nabu:Data shape for reconstruction is (1500, 2048)
WARNING:nabu:File already exists: /lbsram/data/tomwer_test/5.06_crayon_W150_60_Al2_W0.25_xc1000_/5.06_crayon_W150_60_Al2_W0.25_xc1000_pag_db0100_vol/5.06_crayon_W150_60_Al2_W0.25_xc1000_pag_db0100_vol.npy. It will be overwritten as requested in configuration
DEBUG:nabu:Data shape for flatfield is (1500, 350, 2048)
INFO:nabu:Reading data
DEBUG:nabu:Region = (None, None, 308, 658)
DEBUG:nabu:End Reading data
DEBUG:nabu:Transfering radios to GPU
DEBUG:nabu:Allocating radios: (1500, 350, 2048)
INFO:nabu:Applying flat-field
DEBUG:nabu:End Applying flat-field
INFO:nabu:Applying double CCD corrections
DEBUG:nabu:Allocating tmp_ccdcorr_radio: (350, 2048)
DEBUG:nabu:End Applying double CCD corrections
INFO:nabu:Performing phase retrieval
DEBUG:nabu:End Performing phase retrieval
DEBUG:nabu:Reshaping radios from (1500, 350, 2048) to (1500, 322, 2048)
INFO:nabu:Taking logarithm
DEBUG:nabu:End Taking logarithm
INFO:nabu:Building sinograms
DEBUG:nabu:End Building sinograms
INFO:nabu:Reconstruction
DEBUG:nabu:End Reconstruction
DEBUG:nabu:Getting reconstructions from GPU
INFO:nabu:Saving data
INFO:nabu:Wrote /lbsram/data/tomwer_test/5.06_crayon_W150_60_Al2_W0.25_xc1000_/5.06_crayon_W150_60_Al2_W0.25_xc1000_pag_db0100_vol/5.06_crayon_W150_60_Al2_W0.25_xc1000_pag_db0100_vol.npy
DEBUG:nabu:End Saving data
INFO:nabu:
Processing sub-volume (630, 980)
DEBUG:nabu:Data shape for flatfield is (1500, 350, 2048)
INFO:nabu:Reading data
DEBUG:nabu:Region = (None, None, 630, 980)
DEBUG:nabu:End Reading data
DEBUG:nabu:Transfering radios to GPU
INFO:nabu:Applying flat-field
DEBUG:nabu:End Applying flat-field
INFO:nabu:Applying double CCD corrections
DEBUG:nabu:End Applying double CCD corrections
INFO:nabu:Performing phase retrieval
DEBUG:nabu:End Performing phase retrieval
DEBUG:nabu:Reshaping radios from (1500, 350, 2048) to (1500, 322, 2048)
INFO:nabu:Taking logarithm
DEBUG:nabu:End Taking logarithm
INFO:nabu:Building sinograms
DEBUG:nabu:End Building sinograms
INFO:nabu:Reconstruction
DEBUG:nabu:End Reconstruction
DEBUG:nabu:Getting reconstructions from GPU
INFO:nabu:Saving data
INFO:nabu:Wrote /lbsram/data/tomwer_test/5.06_crayon_W150_60_Al2_W0.25_xc1000_/5.06_crayon_W150_60_Al2_W0.25_xc1000_pag_db0100_vol/5.06_crayon_W150_60_Al2_W0.25_xc1000_pag_db0100_vol.npy
DEBUG:nabu:End Saving data