Commits · master · tomotools / Nabu

20 Nov, 2020 21 commits
- Merge branch 'release_2020.5.0' into 'master' · c0a2fdb4
  Pierre Paleo authored Nov 20, 2020
```
Prepare release 2020.5.0

Closes #204, #206, #207, and #205

See merge request !98
```
  c0a2fdb4
- Fix loading only one value giving a scalar with np.loadtxt · fde07d4a
  Pierre Paleo authored Nov 20, 2020
  
  fde07d4a
- Update setup.py requirements, especially h5py < 3.0 · 0f729002
  Pierre Paleo authored Nov 18, 2020
  
  0f729002
- Bump version · 005832d7
  Pierre Paleo authored Nov 16, 2020
  
  005832d7
- Compute end_xy with binning · f1b656d9
  Pierre Paleo authored Nov 16, 2020
  
  f1b656d9
- LocalReconstruction: Prevent issue when out_dir empty and dataset is a local path · 3b68f7d0
  Pierre Paleo authored Nov 16, 2020
  
  3b68f7d0
- Robustify CudaKernel integer types · e451ad18
  Pierre Paleo authored Nov 14, 2020
  
  e451ad18
- nxflatfield: fix h5py bytes/str when loading nabu_processes.h5 · a630a0aa
  Pierre Paleo authored Nov 13, 2020
  
  a630a0aa
- Fix nabu_processes not being written · 50f232e1
  Pierre Paleo authored Nov 13, 2020
  
  50f232e1
- Update changelog · 598b7734
  Pierre Paleo authored Nov 12, 2020
  
  598b7734
- Remove debug trace · a0e4bfd3
  Pierre Paleo authored Nov 12, 2020
  
  a0e4bfd3
- Attempt at mitigating cuda memory issue · bd6da794
  Pierre Paleo authored Nov 12, 2020
  
  bd6da794
- Use a margin when using unsharp and no phase · 7b20711b
  Pierre Paleo authored Nov 12, 2020
  
  7b20711b
- [doc] Add whatsnew for 2020.5.0 · b94a7613
  Pierre Paleo authored Nov 12, 2020
  
  b94a7613
- [doc] Update features · 42b4ad44
  Pierre Paleo authored Nov 12, 2020
  
  42b4ad44
- [doc] Update changelog · 5f094a29
  Pierre Paleo authored Nov 12, 2020
  
  5f094a29
- doc: update APIdoc · 4ffefbb7
  Pierre Paleo authored Nov 12, 2020
  
  4ffefbb7
- Bump version · 4d32cfef
  Pierre Paleo authored Nov 12, 2020
  
  4d32cfef
- Merge branch 'ignore_projections' into 'master' · 57425323
  Pierre Paleo authored Nov 20, 2020
```
Ignore projections

Closes #187

See merge request !94
```
  57425323
- EDFDatasetScanner: fix remove_unused_projections · ccda08db
  Pierre Paleo authored Nov 09, 2020
  
  ccda08db
- dataset_analyser: replace tomo_n with len(projections) · 0dd8f1b9
  Pierre Paleo authored Nov 09, 2020
  
  0dd8f1b9
10 Nov, 2020 7 commits
- Merge branch '198-simple-half-acq-cor' into 'master' · 18e971f0
  Pierre Paleo authored Nov 10, 2020
```
Resolve "Add simple half-acquisition CoR finding algorithms"

Closes #198

See merge request !93
```
  18e971f0
- Fix: remove overwrite of nabu_config when using binning · cd8d4103
  Pierre Paleo authored Nov 10, 2020
  
  cd8d4103
- Handle argument specific to CenterOfRotationSlidingWindow · 04a6cb57
  Pierre Paleo authored Nov 10, 2020
  
  04a6cb57
- Add remark in doc for cor_options · ba44d1da
  Pierre Paleo authored Nov 10, 2020
  
  ba44d1da
- Plug new methods to CORFinder, retrieving user parameters · 032e4369
  Pierre Paleo authored Nov 10, 2020
  
  032e4369
- Add new COR methods in validators · 040a22b4
  Pierre Paleo authored Nov 10, 2020
  
  040a22b4
- Add cor_options in nabu config. Complete description of autoCOR methods. · 6b771b3b
  Pierre Paleo authored Nov 10, 2020
  
  6b771b3b
09 Nov, 2020 10 commits
- Alignment: implemented sliding and growing window CoR methods · a3d8c880
  Nicola Vigano authored Oct 30, 2020
```
They work for centered axis, and half-acquisition, on projections and
sinograms.
Signed-off-by: Nicola VIGANÒ <nicola.vigano@esrf.fr>
```
  a3d8c880
- Merge branch 'alignment_long_tests' into 'master' · 2e415f39
  Pierre Paleo authored Nov 09, 2020
```
Alignment long tests

Closes #197

See merge request !95
```
  2e415f39
- Fix parsing of do_long_tests from environment variable · d9477559
  Pierre Paleo authored Nov 09, 2020
  
  d9477559
- alignment: Fix self in static method · d373814c
  Pierre Paleo authored Nov 09, 2020
  
  d373814c
- Skip long tests in alignment · 547483ce
  Pierre Paleo authored Nov 09, 2020
  
  547483ce
- Expose exclude_projections in nabu config · b12fe923
  Pierre Paleo authored Nov 06, 2020
  
  b12fe923
- resources.DatasetAnalyzer: add exclude_projections mechanism · 0c5fb7a9
  Pierre Paleo authored Nov 06, 2020
  
  0c5fb7a9
- resources.utils: make get_values_from_file more flexible · 83c59844
  Pierre Paleo authored Nov 06, 2020
  
  83c59844
- dataset_analyzer: catch all exceptions for magnified_pixel_size · 318d5383
  Pierre Paleo authored Nov 09, 2020
  
  318d5383
- Add dev suffix to development version · 242fe4ba
  Pierre Paleo authored Nov 09, 2020
  
  242fe4ba
06 Nov, 2020 2 commits
- Merge branch 'defensive_cor_adaptive_search' into 'master' · f742c1d5
  Pierre Paleo authored Nov 06, 2020
```
Defensive cor adaptive search

See merge request !81
```
  f742c1d5
- fixed a filtering condition · 95c303f7
  myron authored Nov 04, 2020
  
  95c303f7