Commits · cor_adaptive_search_in_selected_regions_correction · tomotools / Nabu

View open merge request

10 Nov, 2020 12 commits
- using np.iterable and np.isscalar instead of isinstance(.... · cf73400c
  myron authored Nov 10, 2020
  
  cf73400c
- made sure that at least thre trials are used · 680293bf
  myron authored Nov 10, 2020
  
  680293bf
- corrected indexing of guess when it is a scalar · 46482a7e
  myron authored Nov 10, 2020
  
  46482a7e
- black passed on modifications · 1fbeb32c
  myron authored Nov 10, 2020
  
  1fbeb32c
- features works and test works too · 26d52520
  myron authored Nov 10, 2020
  
  26d52520
- Merge branch '198-simple-half-acq-cor' into 'master' · 18e971f0
  Pierre Paleo authored Nov 10, 2020
```
Resolve "Add simple half-acquisition CoR finding algorithms"

Closes #198

See merge request tomotools/nabu!93
```
  18e971f0
- Fix: remove overwrite of nabu_config when using binning · cd8d4103
  Pierre Paleo authored Nov 10, 2020
  
  cd8d4103
- Handle argument specific to CenterOfRotationSlidingWindow · 04a6cb57
  Pierre Paleo authored Nov 10, 2020
  
  04a6cb57
- Add remark in doc for cor_options · ba44d1da
  Pierre Paleo authored Nov 10, 2020
  
  ba44d1da
- Plug new methods to CORFinder, retrieving user parameters · 032e4369
  Pierre Paleo authored Nov 10, 2020
  
  032e4369
- Add new COR methods in validators · 040a22b4
  Pierre Paleo authored Nov 10, 2020
  
  040a22b4
- Add cor_options in nabu config. Complete description of autoCOR methods. · 6b771b3b
  Pierre Paleo authored Nov 10, 2020
  
  6b771b3b
09 Nov, 2020 10 commits
- Alignment: implemented sliding and growing window CoR methods · a3d8c880
  Nicola Vigano authored Oct 30, 2020 and Pierre Paleo committed Nov 09, 2020
```
They work for centered axis, and half-acquisition, on projections and
sinograms.
Signed-off-by: Nicola VIGANÒ <nicola.vigano@esrf.fr>
```
  a3d8c880
- Merge branch 'alignment_long_tests' into 'master' · 2e415f39
  Pierre Paleo authored Nov 09, 2020
```
Alignment long tests

Closes #197

See merge request tomotools/nabu!95
```
  2e415f39
- Fix parsing of do_long_tests from environment variable · d9477559
  Pierre Paleo authored Nov 09, 2020
  
  d9477559
- alignment: Fix self in static method · d373814c
  Pierre Paleo authored Nov 09, 2020
  
  d373814c
- Skip long tests in alignment · 547483ce
  Pierre Paleo authored Nov 09, 2020
  
  547483ce
- Expose exclude_projections in nabu config · b12fe923
  Pierre Paleo authored Nov 06, 2020
  
  b12fe923
- resources.DatasetAnalyzer: add exclude_projections mechanism · 0c5fb7a9
  Pierre Paleo authored Nov 06, 2020
  
  0c5fb7a9
- resources.utils: make get_values_from_file more flexible · 83c59844
  Pierre Paleo authored Nov 06, 2020
  
  83c59844
- dataset_analyzer: catch all exceptions for magnified_pixel_size · 318d5383
  Pierre Paleo authored Nov 09, 2020
  
  318d5383
- Add dev suffix to development version · 242fe4ba
  Pierre Paleo authored Nov 09, 2020
  
  242fe4ba
06 Nov, 2020 18 commits
- Merge branch 'defensive_cor_adaptive_search' into 'master' · f742c1d5
  Pierre Paleo authored Nov 06, 2020
```
Defensive cor adaptive search

See merge request tomotools/nabu!81
```
  f742c1d5
- fixed a filtering condition · 95c303f7
  myron authored Nov 04, 2020 and Pierre Paleo committed Nov 06, 2020
  
  95c303f7
- dealing with empty insets · 160f85bc
  myron authored Nov 04, 2020 and Pierre Paleo committed Nov 06, 2020
  
  160f85bc
- removed synthetic images · 8e740585
  myron authored Nov 04, 2020 and Pierre Paleo committed Nov 06, 2020
  
  8e740585
- consider also the case where none is filtered · d00ff153
  myron authored Nov 03, 2020 and Pierre Paleo committed Nov 06, 2020
  
  d00ff153
- even more defensive. Should always work now · e6210b70
  myron authored Nov 03, 2020 and Pierre Paleo committed Nov 06, 2020
  
  e6210b70
- alignment: CoR pass neighborhood as a debug message · 40c8629c
  Pierre Paleo authored Nov 03, 2020
  
  40c8629c
- resources.cor: defer class instantiation · ed615fe7
  Pierre Paleo authored Nov 03, 2020
  
  ed615fe7
- Propagate logger from ProcessConfig · ebe58ac7
  Pierre Paleo authored Oct 30, 2020
  
  ebe58ac7
- CORFinder: propagate logger to CenterOfRotation · cb66e3da
  Pierre Paleo authored Oct 30, 2020
  
  cb66e3da
- Don't use absolute import within module · 8aba240a
  Pierre Paleo authored Oct 30, 2020
  
  8aba240a
- rebasing done · 4c7806bd
  myron authored Oct 28, 2020 and Pierre Paleo committed Nov 06, 2020
  
  4c7806bd
- implements the result validation check · 3c44ac32
  myron authored Oct 12, 2020 and Pierre Paleo committed Nov 06, 2020
  
  3c44ac32
- Retrieval of the optimal position trial in adaptive search and informative message to the logger · 2a519fcd
  myron authored Oct 12, 2020 and Pierre Paleo committed Nov 06, 2020
  
  2a519fcd
- This commits implements a safe treatment of exceptions raised by... · 6bb00ae6
  myron authored Oct 28, 2020 and Pierre Paleo committed Nov 06, 2020
```
This commits implements a safe treatment of exceptions raised by CenterOfRotation when used from withing CenterOfRotationAdaptiveSearch

# Conflicts:
#	nabu/preproc/alignment.py
```
  6bb00ae6
- changed the CoR validation criteria to make it more roboust · 22b4005e
  myron authored Oct 26, 2020 and Pierre Paleo committed Nov 06, 2020
  
  22b4005e
- proper initialisation of the check_result in find_shift · 49432df4
  myron authored Oct 12, 2020 and Pierre Paleo committed Nov 06, 2020
  
  49432df4
- implements the result validation check · 3b0b9bc7
  myron authored Oct 12, 2020 and Pierre Paleo committed Nov 06, 2020
  
  3b0b9bc7