Commits · 00a34bc67b388f06b4dee306364a668eebbe4a4e · tomotools / Nabu · GitLab

24 Jun, 2020 1 commit
- Using scipy.fft.rfft if available · 00a34bc6
  myron authored Jun 24, 2020
  
  00a34bc6
23 Jun, 2020 4 commits
- Alignment: fixed fitting of Detector translation, due to first element having to being 0 · 98536e60
  Nicola Vigano authored Jun 23, 2020
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Thanks Christian for spotting this

Signed-off-by: Nicola VIGANÒ <nicola.vigano@esrf.fr>
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  98536e60
- added a synthetic test/example and completed the doc. · 08326b6e
  myron authored Jun 23, 2020
  
  08326b6e
- Alignment: fixed shifts in test · 284b7138
  Nicola Vigano authored Jun 23, 2020
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Signed-off-by: Nicola VIGANÒ <nicola.vigano@esrf.fr>
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  284b7138
- Alignment: fixed bug due to out-dated variable content · 37713ab9
  Nicola Vigano authored Jun 23, 2020
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Thanks Alessandro for spotting this

Signed-off-by: Nicola VIGANÒ <nicola.vigano@esrf.fr>
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  37713ab9
22 Jun, 2020 1 commit
- Alignment: added plotting and moved properties in base class · 081c272b
  Nicola Vigano authored Jun 22, 2020
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Signed-off-by: Nicola VIGANÒ <nicola.vigano@esrf.fr>
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  081c272b
21 Jun, 2020 5 commits
- Alignment: added 1d peak regions extraction along a given axis, from 2d images · dd0f5109
  Nicola Vigano authored Jun 21, 2020
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Signed-off-by: Nicola VIGANÒ <nicola.vigano@esrf.fr>
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  dd0f5109
- Alignment: detector translation: simplified function · 43886ebe
  Nicola Vigano authored Jun 21, 2020
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Signed-off-by: Nicola VIGANÒ <nicola.vigano@esrf.fr>
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  43886ebe
- Alignment: allow fitting of multiple 1D peaks in one call · f30cb49b
  Nicola Vigano authored Jun 21, 2020
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Signed-off-by: Nicola VIGANÒ <nicola.vigano@esrf.fr>
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  f30cb49b
- Alignment: added band-pass filter computation and perform filtering in correlation · 9eb7a31c
  Nicola Vigano authored Jun 21, 2020
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Signed-off-by: Nicola VIGANÒ <nicola.vigano@esrf.fr>
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  9eb7a31c
- Alignment: output fixes · 3353b97e
  Nicola Vigano authored Jun 21, 2020
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Signed-off-by: Nicola VIGANÒ <nicola.vigano@esrf.fr>
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  3353b97e
19 Jun, 2020 1 commit
- Implement support for n-dimensional correlations (2D is default) · 6b7c1886
  Nicola Vigano authored Jun 19, 2020
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Signed-off-by: Nicola VIGANÒ <nicola.vigano@esrf.fr>
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  6b7c1886
18 Jun, 2020 6 commits
- optional return argument for shifts. Reference shifts given by bootstrap. · 4aefb158
  myron authored Jun 18, 2020
  
  4aefb158
- Alignment: small restyling · 7d9d43aa
  Nicola Vigano authored Jun 18, 2020
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Signed-off-by: Nicola VIGANÒ <nicola.vigano@esrf.fr>
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  7d9d43aa
- Alignment - tests: renamed test_cor.py to test_alignment.py, since we test the whole module · 518dc8d6
  Nicola Vigano authored Jun 18, 2020
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Signed-off-by: Nicola VIGANÒ <nicola.vigano@esrf.fr>
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  518dc8d6
- Alignment: added test for peak fitting function · 0434e92b
  Nicola Vigano authored Jun 18, 2020
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Signed-off-by: Nicola VIGANÒ <nicola.vigano@esrf.fr>
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  0434e92b
- Alignment: refactored tests into two distinct classes for two distinct functionalities · f83f7735
  Nicola Vigano authored Jun 18, 2020
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Signed-off-by: Nicola VIGANÒ <nicola.vigano@esrf.fr>
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  f83f7735
- added legacy test for detector translation using data from Christian · 4c89c345
  myron authored Jun 18, 2020
  
  4c89c345
17 Jun, 2020 8 commits
- Alignment: added equispaced translation images self detection · 3dc3d20c
  Nicola Vigano authored Jun 17, 2020
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Signed-off-by: Nicola VIGANÒ <nicola.vigano@esrf.fr>
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  3dc3d20c
- Alignment: fixed typo · 8f6ed14a
  Nicola Vigano authored Jun 17, 2020
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Signed-off-by: Nicola VIGANÒ <nicola.vigano@esrf.fr>
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  8f6ed14a
- Alignment: fixed logic error · c44913f2
  Nicola Vigano authored Jun 17, 2020
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Signed-off-by: Nicola VIGANÒ <nicola.vigano@esrf.fr>
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  c44913f2
- CoR: added test for linear convolution · e96b2709
  Nicola Vigano authored Jun 17, 2020
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Signed-off-by: Nicola VIGANÒ <nicola.vigano@esrf.fr>
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  e96b2709
- Alignment: fixed docstring typos · 7dc012bf
  Nicola Vigano authored Jun 17, 2020
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Signed-off-by: Nicola VIGANÒ <nicola.vigano@esrf.fr>
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  7dc012bf
- Moved band-pass filters to dedicated module in misc · 4faa337b
  Nicola Vigano authored Jun 17, 2020
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Signed-off-by: Nicola VIGANÒ <nicola.vigano@esrf.fr>
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  4faa337b
- Alignment: fixed typo · 15b3804e
  Nicola Vigano authored Jun 17, 2020
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Signed-off-by: Nicola VIGANÒ <nicola.vigano@esrf.fr>
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  15b3804e
- Alignment: move peak extraction to dedicated function · 1b664797
  Nicola Vigano authored Jun 17, 2020
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Signed-off-by: Nicola VIGANÒ <nicola.vigano@esrf.fr>
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  1b664797
16 Jun, 2020 3 commits
- Restructured filtering chain and adopted more understandable parameters. Documentation. · cc030af1
  myron authored Jun 16, 2020
  
  cc030af1
- Alignment: fixed minor changes · 0a254fb7
  Nicola Vigano authored Jun 16, 2020
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Signed-off-by: Nicola VIGANÒ <nicola.vigano@esrf.fr>
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  0a254fb7
- Alignment: fixed linear correlation bug · 8db1e720
  Nicola Vigano authored Jun 16, 2020
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Signed-off-by: Nicola VIGANÒ <nicola.vigano@esrf.fr>
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  8db1e720
15 Jun, 2020 11 commits
- Alignment: using logging for warnings · 51dae7c2
  Nicola Vigano authored Jun 15, 2020
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Signed-off-by: Nicola VIGANÒ <nicola.vigano@esrf.fr>
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  51dae7c2
- Alignment: small variable name refactoring · fa77e048
  Nicola Vigano authored Jun 15, 2020
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Signed-off-by: Nicola VIGANÒ <nicola.vigano@esrf.fr>
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  fa77e048
- Alignment: finished implementation of DetectorTranslationAlongBeam.find_shift · f8e57892
  Nicola Vigano authored Jun 15, 2020
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This is also based on some code prepared by Christian Nemoz

Signed-off-by: Nicola VIGANÒ <nicola.vigano@esrf.fr>
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  f8e57892
- Alignment: adapted 1d max fitting to the same style as the 2d version · a99e3a84
  Nicola Vigano authored Jun 15, 2020
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Only difference: here we can use Polynomial.fit from numpy.

Signed-off-by: Nicola VIGANÒ <nicola.vigano@esrf.fr>
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  a99e3a84
- Alignment: perform correlation between neighboring images · e9022e41
  Nicola Vigano authored Jun 14, 2020
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Signed-off-by: Nicola VIGANÒ <nicola.vigano@esrf.fr>
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  e9022e41
- Alignment: adapted stub of DetectorTranslationAlongBeam to the bi-quadratic fitting. · d4a8ea03
  Nicola Vigano authored Jun 14, 2020
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Signed-off-by: Nicola VIGANÒ <nicola.vigano@esrf.fr>
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  d4a8ea03
- Refactored biquadratic fitting, plus minor restyling. · c15fb522
  Nicola Vigano authored Jun 14, 2020
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- Using value coordines for peak sub-pixel position fitting.
- Passed `black` with line width = 127.

Signed-off-by: Nicola VIGANÒ <nicola.vigano@esrf.fr>
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  c15fb522
- 1) biquadratic_refinemnt accepts NxM matrices. 2) Corrected the wrapping... · 99d8dfc1
  myron authored Jun 12, 2020 and Nicola Vigano committed Jun 15, 2020
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1) biquadratic_refinemnt accepts NxM matrices. 2) Corrected the wrapping around periodi boundaries in correlation image
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  99d8dfc1
- atomised biquadradit refinement · 671f7b85
  myron authored Jun 10, 2020 and Nicola Vigano committed Jun 15, 2020
  
  671f7b85
- passed black over last test_cor.py and alignemenet.py · 43433a75
  myron authored Jun 10, 2020 and Nicola Vigano committed Jun 15, 2020
  
  43433a75
- biquadratic refinement of correlation maximum · 7f845d70
  myron authored Jun 10, 2020 and Nicola Vigano committed Jun 15, 2020
  
  7f845d70