Re-create APIdoc

doc/apidoc/nabu.app.reconstructor.rst

-nabu.app.reconstructor module
-=============================
-
-.. automodule:: nabu.app.reconstructor
-   :members:
-   :undoc-members:
-   :show-inheritance:

doc/apidoc/nabu.app.rst

@@ -5,19 +5,24 @@ Submodules
 ----------
 
 .. toctree::
+   :maxdepth: 4
 
+   nabu.app.available_components
    nabu.app.ccdfilter
    nabu.app.chunkreader
    nabu.app.component
    nabu.app.flatfield
    nabu.app.logger
+   nabu.app.memtransfer
    nabu.app.opmap
    nabu.app.phase
+   nabu.app.pipeline
    nabu.app.process
-   nabu.app.reconstructor
+   nabu.app.reconstruction
    nabu.app.saving
+   nabu.app.simple_pipeline
+   nabu.app.sinobuilder
    nabu.app.unsharp
-   nabu.app.utils
 
 Module contents
 ---------------

doc/apidoc/nabu.app.utils.rst

-nabu.app.utils module
-=====================
-
-.. automodule:: nabu.app.utils
-   :members:
-   :undoc-members:
-   :show-inheritance:

doc/apidoc/nabu.cuda.rst

@@ -5,6 +5,7 @@ Submodules
 ----------
 
 .. toctree::
+   :maxdepth: 4
 
    nabu.cuda.convolution
    nabu.cuda.kernel

doc/apidoc/nabu.distributed.rst

@@ -5,6 +5,7 @@ Submodules
 ----------
 
 .. toctree::
+   :maxdepth: 4
 
    nabu.distributed.utils
    nabu.distributed.worker

doc/apidoc/nabu.io.rst

@@ -5,9 +5,12 @@ Submodules
 ----------
 
 .. toctree::
+   :maxdepth: 4
 
    nabu.io.config
    nabu.io.reader
+   nabu.io.utils
+   nabu.io.writer
 
 Module contents
 ---------------

doc/apidoc/nabu.misc.rst

@@ -5,10 +5,13 @@ Submodules
 ----------
 
 .. toctree::
+   :maxdepth: 4
 
+   nabu.misc.binning
    nabu.misc.unsharp
    nabu.misc.unsharp_cuda
    nabu.misc.unsharp_opencl
+   nabu.misc.utils
 
 Module contents
 ---------------

doc/apidoc/nabu.opencl.rst

@@ -5,6 +5,7 @@ Submodules
 ----------
 
 .. toctree::
+   :maxdepth: 4
 
    nabu.opencl.utils
 

doc/apidoc/nabu.preproc.rst

@@ -5,9 +5,11 @@ Submodules
 ----------
 
 .. toctree::
+   :maxdepth: 4
 
    nabu.preproc.ccd
    nabu.preproc.ccd_cuda
+   nabu.preproc.double_flat_field
    nabu.preproc.phase
    nabu.preproc.phase_cuda
    nabu.preproc.rings

doc/apidoc/nabu.reconstruction.rst

@@ -5,6 +5,7 @@ Submodules
 ----------
 
 .. toctree::
+   :maxdepth: 4
 
    nabu.reconstruction.fbp
    nabu.reconstruction.fbp_opencl

doc/apidoc/nabu.resources.cli.rst

@@ -5,6 +5,7 @@ Submodules
 ----------
 
 .. toctree::
+   :maxdepth: 4
 
    nabu.resources.cli.bootstrap
    nabu.resources.cli.cli_configs

doc/apidoc/nabu.resources.rst

@@ -5,6 +5,7 @@ Subpackages
 -----------
 
 .. toctree::
+   :maxdepth: 4
 
    nabu.resources.cli
 
@@ -12,6 +13,7 @@ Submodules
 ----------
 
 .. toctree::
+   :maxdepth: 4
 
    nabu.resources.computations
    nabu.resources.dataset_analyzer
@@ -19,8 +21,8 @@ Submodules
    nabu.resources.gpu
    nabu.resources.machinesdb
    nabu.resources.nabu_config
+   nabu.resources.params
    nabu.resources.processconfig
-   nabu.resources.tasks
    nabu.resources.utils
    nabu.resources.validators
 

doc/apidoc/nabu.resources.tasks.rst

-nabu.resources.tasks module
-===========================
-
-.. automodule:: nabu.resources.tasks
-   :members:
-   :undoc-members:
-   :show-inheritance:

doc/apidoc/nabu.rst

@@ -5,6 +5,7 @@ Subpackages
 -----------
 
 .. toctree::
+   :maxdepth: 4
 
    nabu.app
    nabu.cuda
@@ -21,6 +22,7 @@ Submodules
 ----------
 
 .. toctree::
+   :maxdepth: 4
 
    nabu.tests
    nabu.testutils

doc/apidoc/nabu.thirdparty.rst

@@ -5,9 +5,11 @@ Submodules
 ----------
 
 .. toctree::
+   :maxdepth: 4
 
    nabu.thirdparty.pore3d_deringer_munch
    nabu.thirdparty.tomopy_phase
+   nabu.thirdparty.tomwer_load_flats_darks
 
 Module contents
 ---------------

doc/index.rst

@@ -22,6 +22,7 @@ Getting started
    :maxdepth: 1
    :caption: Getting started
  
+   install.md
    definitions.md
    ccdprocessing.md
    phase.md