update the documentation for new attributes and commands + some correction in...

update the documentation for new attributes and commands + some correction in the index.rst for example code
3 jobs for 7-add-energy-threshold-diff-mode in 13 minutes and 39 seconds (queued for 2 seconds)
Status Name Job ID Coverage
  Build
passed build-linux #185403
linux

00:07:51

 
  Build Noarch
passed build-noarch #185404
conda

00:05:48

 
  Deploy
manual deploy-devel #185405
conda linux allowed to fail manual