From c77e3d0f08252b9b8b6c95559141360dbfb6a17d Mon Sep 17 00:00:00 2001
From: preischig <preischig@gmail.com>
Date: Thu, 10 Apr 2014 15:47:15 +0200
Subject: [PATCH] gtSequenceMedianRefs: now accepts empty workingdirectory
input
Signed-off-by: preischig <preischig@gmail.com>
---
1_preprocessing/gtSequenceMedianRefs.m | 8 +++++---
1 file changed, 5 insertions(+), 3 deletions(-)
diff --git a/1_preprocessing/gtSequenceMedianRefs.m b/1_preprocessing/gtSequenceMedianRefs.m
index 386eae5d..25a3a409 100644
--- a/1_preprocessing/gtSequenceMedianRefs.m
+++ b/1_preprocessing/gtSequenceMedianRefs.m
@@ -36,7 +36,7 @@ disp('gtSequenceMedianRefs.m - graintracking specific version')
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
% load('parameters.mat');
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
-if ~exist('workingdirectory', 'var')
+if ~exist('workingdirectory', 'var') || isempty(workingdirectory)
workingdirectory=pwd;
end
cd(workingdirectory)
@@ -122,11 +122,12 @@ for n=0:acq.refon:nimages
i=i+1;
pause(2)
if i>2000 % timeout
- cd(parameters.acq.dir);
+ fprintf('\nTimeout. Exiting...\n')
+ cd(parameters.acq.dir);
return
end
end
- fprintf('Found something!\n')
+ fprintf('Found file.\n')
end
if exist(fname_ref,'file')
@@ -144,6 +145,7 @@ for n=0:acq.refon:nimages
fprintf('Now performing median...\n')
refC=squeeze(median(ref));
info.datatype='uint16';
+ fprintf('Saving file: %s\n', fname_refC)
edf_write(refC,fname_refC, info);
end
--
GitLab