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diff --git a/zUtil_Distortion/distortion_read.m b/zUtil_Distortion/distortion_read.m
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diff --git a/zUtil_ForwardProjection/fp.m b/zUtil_ForwardProjection/fp.m
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diff --git a/zUtil_ForwardProjection/fp_prepare.m b/zUtil_ForwardProjection/fp_prepare.m
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diff --git a/zUtil_ForwardProjection/gtForwardProject.m b/zUtil_ForwardProjection/gtForwardProject.m
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diff --git a/zUtil_ForwardProjection/gtGenFP.m b/zUtil_ForwardProjection/gtGenFP.m
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diff --git a/zUtil_ForwardProjection/gtTrLabToSamBB.m b/zUtil_ForwardProjection/gtTrLabToSamBB.m
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diff --git a/zUtil_ForwardProjection/gtTrSamBBToLab.m b/zUtil_ForwardProjection/gtTrSamBBToLab.m
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diff --git a/zUtil_ForwardProjection/jacobs_ray3d.m b/zUtil_ForwardProjection/jacobs_ray3d.m
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diff --git a/zUtil_ForwardProjection/try1.m b/zUtil_ForwardProjection/try1.m
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diff --git a/zUtil_GVF/BoundMirrorEnsure.m b/zUtil_GVF/BoundMirrorEnsure.m
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diff --git a/zUtil_GVF/BoundMirrorExpand.m b/zUtil_GVF/BoundMirrorExpand.m
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diff --git a/zUtil_GVF/BoundMirrorShrink.m b/zUtil_GVF/BoundMirrorShrink.m
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diff --git a/zUtil_GVF/Contents.m b/zUtil_GVF/Contents.m
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diff --git a/zUtil_GVF/GVF.m b/zUtil_GVF/GVF.m
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diff --git a/zUtil_GVF/dt.m b/zUtil_GVF/dt.m
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diff --git a/zUtil_GVF/gaussianBlur.m b/zUtil_GVF/gaussianBlur.m
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diff --git a/zUtil_GVF/gaussianMask.m b/zUtil_GVF/gaussianMask.m
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diff --git a/zUtil_GVF/gtSnakeBW.m b/zUtil_GVF/gtSnakeBW.m
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diff --git a/zUtil_GVF/gvf_gj.m b/zUtil_GVF/gvf_gj.m
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diff --git a/zUtil_GVF/imdisp.m b/zUtil_GVF/imdisp.m
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diff --git a/zUtil_GVF/snakedeform2.m b/zUtil_GVF/snakedeform2.m
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diff --git a/zUtil_GVF/snakedisp.m b/zUtil_GVF/snakedisp.m
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diff --git a/zUtil_GVF/snakeindex.m b/zUtil_GVF/snakeindex.m
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diff --git a/zUtil_GVF/snakeinit.m b/zUtil_GVF/snakeinit.m
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diff --git a/zUtil_GVF/snakeinterp.m b/zUtil_GVF/snakeinterp.m
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diff --git a/zUtil_GVF/snakeinterp1.m b/zUtil_GVF/snakeinterp1.m
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diff --git a/zUtil_GVF/xconv2.m b/zUtil_GVF/xconv2.m
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diff --git a/zUtil_Help/makehtmldoc.m b/zUtil_Help/makehtmldoc.m
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diff --git a/zUtil_Help/publish_gt.m b/zUtil_Help/publish_gt.m
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diff --git a/zUtil_ICP/closestPoint.m b/zUtil_ICP/closestPoint.m
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diff --git a/zUtil_ICP/iterativeClosestPoint.m b/zUtil_ICP/iterativeClosestPoint.m
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diff --git a/zUtil_ICP/testICP.m b/zUtil_ICP/testICP.m
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diff --git a/zUtil_Imaging/gtAdjustThreshold.m b/zUtil_Imaging/gtAdjustThreshold.m
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diff --git a/zUtil_Imaging/gtAlphaAdjust.m b/zUtil_Imaging/gtAlphaAdjust.m
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diff --git a/zUtil_Imaging/gtBboxSizeMat.m b/zUtil_Imaging/gtBboxSizeMat.m
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diff --git a/zUtil_Imaging/gtCrop.m b/zUtil_Imaging/gtCrop.m
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diff --git a/zUtil_Imaging/gtCropContour.m b/zUtil_Imaging/gtCropContour.m
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diff --git a/zUtil_Imaging/gtExtract.m b/zUtil_Imaging/gtExtract.m
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diff --git a/zUtil_Imaging/gtMask2Poly.m b/zUtil_Imaging/gtMask2Poly.m
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diff --git a/zUtil_Imaging/gtPlaceSubImage.m b/zUtil_Imaging/gtPlaceSubImage.m
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diff --git a/zUtil_Imaging/gtPlaceSubVolume.m b/zUtil_Imaging/gtPlaceSubVolume.m
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diff --git a/zUtil_Imaging/gtShift.m b/zUtil_Imaging/gtShift.m
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diff --git a/zUtil_Imaging/gtShiftContour.m b/zUtil_Imaging/gtShiftContour.m
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diff --git a/zUtil_Imaging/gtShift_subp.m b/zUtil_Imaging/gtShift_subp.m
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diff --git a/zUtil_Imaging/gtShift_xxx.m b/zUtil_Imaging/gtShift_xxx.m
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diff --git a/zUtil_Imaging/hsl2rgb.m b/zUtil_Imaging/hsl2rgb.m
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diff --git a/zUtil_Imaging/rgb2hsl.m b/zUtil_Imaging/rgb2hsl.m
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diff --git a/zUtil_Index/gtDrawGrainCubes2.m b/zUtil_Index/gtDrawGrainCubes2.m
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diff --git a/zUtil_Index/gtINDEXTER.m b/zUtil_Index/gtINDEXTER.m
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diff --git a/zUtil_Index/gtIndexAddToGrains.m b/zUtil_Index/gtIndexAddToGrains.m
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diff --git a/zUtil_Index/gtIndexAllGrainStat.m b/zUtil_Index/gtIndexAllGrainStat.m
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diff --git a/zUtil_Index/gtIndexBuildGrains.m b/zUtil_Index/gtIndexBuildGrains.m
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diff --git a/zUtil_Index/gtIndexCheckAllPairCons.m b/zUtil_Index/gtIndexCheckAllPairCons.m
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diff --git a/zUtil_Index/gtIndexCheckGroupCons.m b/zUtil_Index/gtIndexCheckGroupCons.m
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diff --git a/zUtil_Index/gtIndexCheckPairCons.m b/zUtil_Index/gtIndexCheckPairCons.m
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diff --git a/zUtil_Index/gtIndexCreateGrainOutputAdd.m b/zUtil_Index/gtIndexCreateGrainOutputAdd.m
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diff --git a/zUtil_Index/gtIndexCreateGrainOutputBuild.m b/zUtil_Index/gtIndexCreateGrainOutputBuild.m
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diff --git a/zUtil_Index/gtIndexCreateGrainOutputFinal.m b/zUtil_Index/gtIndexCreateGrainOutputFinal.m
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diff --git a/zUtil_Index/gtIndexCreateGrainOutputMerge.m b/zUtil_Index/gtIndexCreateGrainOutputMerge.m
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diff --git a/zUtil_Index/gtIndexCreateOutput.m b/zUtil_Index/gtIndexCreateOutput.m
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diff --git a/zUtil_Index/gtIndexDefaultStrategy.m b/zUtil_Index/gtIndexDefaultStrategy.m
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diff --git a/zUtil_Index/gtIndexExecuteStrategy.m b/zUtil_Index/gtIndexExecuteStrategy.m
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diff --git a/zUtil_Index/gtIndexFindGroupInCand.m b/zUtil_Index/gtIndexFindGroupInCand.m
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diff --git a/zUtil_Index/gtIndexMatchGrains.m b/zUtil_Index/gtIndexMatchGrains.m
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diff --git a/zUtil_Index/gtIndexMatchGrains_sab.m b/zUtil_Index/gtIndexMatchGrains_sab.m
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diff --git a/zUtil_Index/gtIndexMergeGrains.m b/zUtil_Index/gtIndexMergeGrains.m
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diff --git a/zUtil_Index/gtIndexSelectLines.m b/zUtil_Index/gtIndexSelectLines.m
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diff --git a/zUtil_Index/gtIndexStrategyExample.m b/zUtil_Index/gtIndexStrategyExample.m
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diff --git a/zUtil_Index/gtIndexTryAddLineToGroup.m b/zUtil_Index/gtIndexTryAddLineToGroup.m
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diff --git a/zUtil_Index/gtIndexUniquePlaneNormals.m b/zUtil_Index/gtIndexUniquePlaneNormals.m
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diff --git a/zUtil_Index/helpers.m b/zUtil_Index/helpers.m
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diff --git a/zUtil_Maths/deg2rad.m b/zUtil_Maths/deg2rad.m
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diff --git a/zUtil_Maths/fit_ellipse.m b/zUtil_Maths/fit_ellipse.m
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diff --git a/zUtil_Maths/gtIsPointInPolyhedron.m b/zUtil_Maths/gtIsPointInPolyhedron.m
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diff --git a/zUtil_Maths/gtLinePlaneIntersection.m b/zUtil_Maths/gtLinePlaneIntersection.m
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diff --git a/zUtil_Maths/gtLinePolyhedronIntersection.m b/zUtil_Maths/gtLinePolyhedronIntersection.m
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diff --git a/zUtil_Maths/gtOutliers.m b/zUtil_Maths/gtOutliers.m
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diff --git a/zUtil_Maths/gtRange.m b/zUtil_Maths/gtRange.m
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diff --git a/zUtil_Maths/lsplane.m b/zUtil_Maths/lsplane.m
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diff --git a/zUtil_Maths/m2m.m b/zUtil_Maths/m2m.m
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diff --git a/zUtil_Maths/ordfilt3D.m b/zUtil_Maths/ordfilt3D.m
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diff --git a/zUtil_Maths/rad2deg.m b/zUtil_Maths/rad2deg.m
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diff --git a/zUtil_Maths/t2x.m b/zUtil_Maths/t2x.m
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diff --git a/zUtil_Maths/x2t.m b/zUtil_Maths/x2t.m
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diff --git a/zUtil_Parameters/gtAddMatFile.m b/zUtil_Parameters/gtAddMatFile.m
index 1ce8813f8b1b186c9c1233455adda88f826f039a..b2ae488a6ecd40118ce618aef196f6c52bade618 100644
--- a/zUtil_Parameters/gtAddMatFile.m
+++ b/zUtil_Parameters/gtAddMatFile.m
@@ -1,7 +1,16 @@
-function updateFile = gtAddMatFile(existingFile,var,update,missing,addall)
-% GTADDMATFILE Merges, adds or updates fields between mat files
-% updateFile = gtAddMatFile(existingFile,var,update,missing,addall)
+function updateFile = gtAddMatFile(existingFile,newFile,update,missing,addall)
+% GTADDMATFILE Merges, adds or updates fields between .mat files
+% updateFile = gtAddMatFile(existingFile,newFile,update,missing,addall)
% -------------------------------------------------------------
+% INPUT:
+% existingFile = the existing structure to be updated/modified
+% newfile = the new structure to be added to the existing one
+% update = flag to update each of the existing fields in 'existingFile' by double-checking {false}
+% missing = flag to add missing fields in 'existingFile' from 'newFile' {false}
+% addall = flag to add all the fields of 'newFile' to 'existingFile' without a double-check {false}
+%
+% OUTPUT:
+% updateFile = the resulting structure
%
%
% FUNCTIONS CALLED:
@@ -10,45 +19,43 @@ function updateFile = gtAddMatFile(existingFile,var,update,missing,addall)
if ~exist('update','var') || isempty(update)
update=false;
end
-
if ~exist('missing','var') || isempty(missing)
missing=false;
end
-
if ~exist('addall','var') || isempty(addall)
addall=false;
end
-names=fieldnames(var); %parameters structure
-existnames=fieldnames(existingFile); %update parameters structure
+names = fieldnames(newFile); %parameters structure
+existnames = fieldnames(existingFile); %update parameters structure
for i=1:length(names)
- if ~isfield(existingFile,names{i}) && ~isfield(existingFile,lower(names{i})) % is not field
+ if ~isfield(existingFile,names{i}) && ~isfield(existingFile,lower(names{i})) % is not a field
if missing && ~addall
variable=names{i}
check=inputwdefault('Do you want to add this field?','n')
if strcmpi(check,'y')
disp(['added field: ' names{i}])
- existingFile.(names{i})=var.(names{i});
+ existingFile.(names{i})=newFile.(names{i});
end
elseif missing || addall
disp(['added field: ' names{i}])
- existingFile.(names{i})=var.(names{i});
+ existingFile.(names{i})=newFile.(names{i});
end
end
- if isfield(existingFile,lower(names{i})) && ~isfield(existingFile,names{i}) %is a field lowercase
+ if isfield(existingFile,lower(names{i})) && ~isfield(existingFile,names{i}) %is a field but lowercase
variable=lower(names{i})
if ~update
oldvalue=existingFile.(variable)
- newvalue=var.(names{i})
+ newvalue=newFile.(names{i})
check=inputwdefault('Are you sure to replace it with the new value?','n')
else
names{i}
check=inputwdefault('Are those the same thing?','n')
if strcmpi(check,'y')
disp(['updated field: ' variable ' with field: ' names{i}])
- existingFile.(variable)=var.(names{i});
+ existingFile.(variable)=newFile.(names{i});
end
end
end
@@ -56,17 +63,17 @@ for i=1:length(names)
if ~update
variable=names{i}
oldvalue=existingFile.(names{i})
- newvalue=var.(names{i})
+ newvalue=newFile.(names{i})
check=inputwdefault('Do you want to replace it with the new value?','n')
if strcmpi(check,'y')
disp(['replaced field: ' names{i}])
- existingFile.(names{i})=var.(names{i});
+ existingFile.(names{i})=newFile.(names{i});
end
else
disp(['updated field: ' names{i}])
- existingFile.(names{i})=var.(names{i});
+ existingFile.(names{i})=newFile.(names{i});
end
end
end
diff --git a/zUtil_Strain/TestRodriguesOp.m b/zUtil_Strain/TestRodriguesOp.m
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diff --git a/zUtil_Strain/grainorientations.m b/zUtil_Strain/grainorientations.m
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diff --git a/zUtil_Strain/gtAddGrainLatticePar.m b/zUtil_Strain/gtAddGrainLatticePar.m
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diff --git a/zUtil_Strain/gtAddGrainLatticePar_sab.m b/zUtil_Strain/gtAddGrainLatticePar_sab.m
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diff --git a/zUtil_Strain/gtAllGrainValues.m b/zUtil_Strain/gtAllGrainValues.m
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diff --git a/zUtil_Strain/gtDrawGrainCubes.m b/zUtil_Strain/gtDrawGrainCubes.m
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diff --git a/zUtil_Strain/gtEstimateErrors.m b/zUtil_Strain/gtEstimateErrors.m
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diff --git a/zUtil_Strain/gtGeoSim.m b/zUtil_Strain/gtGeoSim.m
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diff --git a/zUtil_Strain/gtINUniquePlaneNormals.m b/zUtil_Strain/gtINUniquePlaneNormals.m
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diff --git a/zUtil_Strain/gtINUniquePlaneNormals_sab.m b/zUtil_Strain/gtINUniquePlaneNormals_sab.m
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diff --git a/zUtil_Strain/gtKeepLine.m b/zUtil_Strain/gtKeepLine.m
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diff --git a/zUtil_Strain/gtMatrix2Vector.m b/zUtil_Strain/gtMatrix2Vector.m
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diff --git a/zUtil_Strain/gtPlotSampleEnv.m b/zUtil_Strain/gtPlotSampleEnv.m
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diff --git a/zUtil_Strain/gtPlotUniErrors.m b/zUtil_Strain/gtPlotUniErrors.m
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diff --git a/zUtil_Strain/gtPlotUniPlanes.m b/zUtil_Strain/gtPlotUniPlanes.m
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diff --git a/zUtil_Strain/gtSTRDeleteStrainInGrains.m b/zUtil_Strain/gtSTRDeleteStrainInGrains.m
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diff --git a/zUtil_Strain/gtStrainDoAll.m b/zUtil_Strain/gtStrainDoAll.m
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diff --git a/zUtil_Strain/gtStrainDrawPrincipalStrainVectors.m b/zUtil_Strain/gtStrainDrawPrincipalStrainVectors.m
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diff --git a/zUtil_Strain/gtStrainErrors.m b/zUtil_Strain/gtStrainErrors.m
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diff --git a/zUtil_Strain/gtStrainFitElasticConstants.m b/zUtil_Strain/gtStrainFitElasticConstants.m
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diff --git a/zUtil_Strain/gtStrainFitElasticConstants_test.m b/zUtil_Strain/gtStrainFitElasticConstants_test.m
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diff --git a/zUtil_Strain/gtStrainGrains.m b/zUtil_Strain/gtStrainGrains.m
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diff --git a/zUtil_Strain/gtStrainNormalProductSTD.m b/zUtil_Strain/gtStrainNormalProductSTD.m
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diff --git a/zUtil_Strain/gtStrainPlanes.m b/zUtil_Strain/gtStrainPlanes.m
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diff --git a/zUtil_Strain/gtStrainPlotResults.m b/zUtil_Strain/gtStrainPlotResults.m
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diff --git a/zUtil_Strain/gtStrainSpotSpread.m b/zUtil_Strain/gtStrainSpotSpread.m
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diff --git a/zUtil_Strain/gtStrainSpotSpreadDiff.m b/zUtil_Strain/gtStrainSpotSpreadDiff.m
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diff --git a/zUtil_Strain/gtStrainSpotSpreadDiff_B.m b/zUtil_Strain/gtStrainSpotSpreadDiff_B.m
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diff --git a/zUtil_Strain/gtStrainTensor.m b/zUtil_Strain/gtStrainTensor.m
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diff --git a/zUtil_Strain/gtStrainTensorFit.m b/zUtil_Strain/gtStrainTensorFit.m
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diff --git a/zUtil_Strain/gtStrainTensorFitDev.m b/zUtil_Strain/gtStrainTensorFitDev.m
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diff --git a/zUtil_Strain/gtVector2Matrix.m b/zUtil_Strain/gtVector2Matrix.m
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diff --git a/zUtil_Strain/myRod2g.m b/zUtil_Strain/myRod2g.m
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diff --git a/zUtil_Strain/untitled.m b/zUtil_Strain/untitled.m
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diff --git a/zUtil_Strain/xxx2_gtDrawGrainCubes.m b/zUtil_Strain/xxx2_gtDrawGrainCubes.m
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