diff --git a/zUtil_ForwardSim/gtFwdSimBuildDifstackBlobs.m b/zUtil_ForwardSim/gtFwdSimBuildDifstackBlobs.m index edef6589ab7b78e8836e197e2375728232137893..bf49e9109365dd12706459190c774f6ca0fe9470 100644 --- a/zUtil_ForwardSim/gtFwdSimBuildDifstackBlobs.m +++ b/zUtil_ForwardSim/gtFwdSimBuildDifstackBlobs.m @@ -47,7 +47,7 @@ function bl = gtFwdSimBuildDifstackBlobs(blobids, indexes, parameters, stackUSiz shifts_blob = gtFwdSimGetStackShifts(stackUSize, stackVSize, blob_bb, false); shifts = [shifts_blob.u, shifts_blob.v, 1]; - % We are applying a padding of one slice (perside) on the w + % We are applying a padding of one slice (per side) on the w % diretion blob_size_im = [stackUSize, stackVSize, blob_bb(6)+2]; blob_bb_im = [blob_bb(1:3) - shifts, blob_size_im]; diff --git a/zUtil_ForwardSim/gtGetRawRoi.m b/zUtil_ForwardSim/gtGetRawRoi.m index 4319c96ed7a73dcb1fb4e13415e46116bdd7dd10..18f69b9838d3af611ddce72673c93cbcc446b65d 100644 --- a/zUtil_ForwardSim/gtGetRawRoi.m +++ b/zUtil_ForwardSim/gtGetRawRoi.m @@ -2,6 +2,9 @@ function [spot, m] = gtGetRawRoi(start_image, end_image, acq, bb) % GETRAWROI Sums a roi in raw images % [spot, m] = gtGetRawRoi(start_image, end_image, acq, bb) + p = struct('acq', acq); + tot_images = gtGetTotNumberOfImages(p); + nimages = end_image - start_image + 1; spot = zeros(bb(4), bb(3), nimages); m = zeros(nimages, 1); @@ -11,7 +14,7 @@ function [spot, m] = gtGetRawRoi(start_image, end_image, acq, bb) % was < acq.xdet and < acq.ydet if all([bb(1) > 0, bb(2) > 0, bb(1)+bb(3) <= acq.xdet, bb(2)+bb(4) <= acq.ydet]) fullImgsDir = fullfile(acq.dir, '1_preprocessing', 'full'); - indexes = start_image : end_image; + indexes = mod(start_image : end_image, tot_images); filename = fullfile(fullImgsDir, sprintf('full%04d.edf', indexes(1))); info = edf_info(filename);