diff --git a/4_grains/gtGrainImportTopotomoScan.m b/4_grains/gtGrainImportTopotomoScan.m index 473e9aae10b339a17f5b51ff8d2a8d086fd0eaef..5a48814c9a5adf023fbebdf0610c0f36ccdeb5c3 100644 --- a/4_grains/gtGrainImportTopotomoScan.m +++ b/4_grains/gtGrainImportTopotomoScan.m @@ -33,7 +33,8 @@ function gr = gtGrainImportTopotomoScan(gr, p, det_ind, data_type) b_vol = zeros(b_size, data_type); for ii_p = 1:nph filen_name = fullfile(base_dir, [base_name, sprintf('%04d.edf', (ii_b - 1) * nph + ii_p)]); - b_vol(:, :, ii_p) = edf_read(filen_name, [], 'nodisp', info); + % Heads up: transposing the images + b_vol(:, :, ii_p) = edf_read(filen_name, [], 'nodisp', info, 'permute', false); end bck_grnd = median(b_vol(:, :, [1:5, end-5:end]), 3);