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Commits
ca1b1261
Commit
ca1b1261
authored
Jan 27, 2020
by
bliss administrator
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[writer] improve VDS logging
parent
44faaa70
Pipeline
#20291
failed with stages
in 33 minutes and 17 seconds
Changes
2
Pipelines
1
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2 changed files
with
17 additions
and
15 deletions
+17
-15
nexus_writer_service/io/nexus.py
nexus_writer_service/io/nexus.py
+1
-5
nexus_writer_service/subscribers/dataset_proxy.py
nexus_writer_service/subscribers/dataset_proxy.py
+16
-10
No files found.
nexus_writer_service/io/nexus.py
View file @
ca1b1261
...
...
@@ -1338,11 +1338,7 @@ def nxCreateDataSet(h5group, name, value, attrs, stringasuri=False):
value
=
dict
(
value
)
axis
=
value
.
pop
(
"axis"
,
0
)
uris
=
value
.
pop
(
"data"
,
[])
logger
.
debug
(
"Create HDF5 dataset {}/{}: merge {}"
.
format
(
getUri
(
h5group
),
name
,
uris
)
)
logger
.
debug
(
"Create HDF5 dataset {}/{}"
.
format
(
getUri
(
h5group
),
name
))
createMergedDataset
(
h5group
,
name
,
uris
,
axis
=
axis
,
**
value
)
else
:
# TODO: external datasets do not support relative paths
...
...
nexus_writer_service/subscribers/dataset_proxy.py
View file @
ca1b1261
...
...
@@ -491,8 +491,8 @@ class DatasetProxy(BaseProxy):
def
_dset_value
(
self
):
value
=
{
"fillvalue"
:
self
.
fillvalue
,
"dtype"
:
self
.
dtype
}
if
self
.
_external_datasets
:
uris
,
fill_generator
=
self
.
_external_dataset_uris
()
value
[
"data"
]
=
uri
s
files
,
n
uris
,
fill_generator
=
self
.
_external_dataset_uris
()
value
[
"data"
]
=
file
s
value
[
"order"
]
=
self
.
saveorder
value
[
"fill_generator"
]
=
fill_generator
value
[
"axis"
]
=
0
...
...
@@ -501,13 +501,17 @@ class DatasetProxy(BaseProxy):
if
nexus
.
HASVIRTUAL
:
value
[
"shape"
]
=
self
.
current_shape
self
.
logger
.
info
(
"create as merged external HDF5 datasets (link using VDS)"
"merge {} URIs from {} files as a virtual dataset"
.
format
(
nuris
,
len
(
files
)
)
)
else
:
value
[
"compression"
]
=
self
.
compression
value
[
"chunks"
]
=
self
.
chunks
self
.
logger
.
info
(
"create as merged external HDF5 datasets (copy because VDS not supported)"
"merge {} URIs from {} files as a copy (VDS not supported)"
.
format
(
nuris
,
len
(
files
)
)
)
elif
self
.
_external_raw
:
self
.
_get_external_raw
(
value
)
...
...
@@ -533,8 +537,9 @@ class DatasetProxy(BaseProxy):
# links are absolute paths
value
[
"shape"
]
=
self
.
current_shape
value
[
"chunks"
]
=
None
self
.
logger
.
debug
(
"create as merged external non-HDF5 data (link using external dataset)"
nuris
=
len
(
value
.
get
(
"external"
,
[]))
self
.
logger
.
info
(
"merge {} URIs as external (non-HDF5) dataset"
.
format
(
nuris
)
)
elif
self
.
_external_names
:
value
=
[]
...
...
@@ -542,7 +547,7 @@ class DatasetProxy(BaseProxy):
for
filename
,
ind
in
self
.
_external_names
:
filename
=
os
.
path
.
relpath
(
filename
,
dirname
)
value
.
append
(
"{}::{}"
.
format
(
filename
,
ind
))
self
.
logger
.
debug
(
"create as list of uris"
)
self
.
logger
.
info
(
"merge {} URIs as list of strings"
.
format
(
len
(
value
))
)
else
:
value
[
"shape"
]
=
self
.
current_shape
value
[
"chunks"
]
=
self
.
chunks
...
...
@@ -553,7 +558,7 @@ class DatasetProxy(BaseProxy):
def
_external_dataset_uris
(
self
):
"""
:returns list, generator:
:returns list,
num,
generator:
"""
# Assume dataset shapes are (nframes, detdim0, detdim1, ...)
extorder
=
Order
()
...
...
@@ -590,8 +595,9 @@ class DatasetProxy(BaseProxy):
yield
uri
,
index_generator
uris
=
list
(
uridict
.
keys
())
return
uris
,
fill_generator
files
=
list
(
uridict
.
keys
())
nuris
=
sum
(
len
(
v
)
for
v
in
uridict
.
values
())
return
files
,
nuris
,
fill_generator
def
_add_detidx
(
self
,
tpl
,
corder
):
if
not
isinstance
(
tpl
,
tuple
):
...
...
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