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XRD
darfix
Commits
7c71a7eb
Commit
7c71a7eb
authored
Jul 15, 2021
by
Julia Garriga Ferrer
Browse files
[orangecontrib][zsum] Change origin and scale of image if transformation
parent
05091086
Pipeline
#50624
passed with stage
in 2 minutes and 23 seconds
Changes
1
Pipelines
1
Hide whitespace changes
Inline
Side-by-side
orangecontrib/darfix/widgets/zsum.py
View file @
7c71a7eb
...
...
@@ -26,7 +26,7 @@
__authors__
=
[
"J. Garriga"
]
__license__
=
"MIT"
__date__
=
"1
1
/12/2020"
__date__
=
"1
5
/12/2020"
from
silx.gui.colors
import
Colormap
...
...
@@ -59,6 +59,7 @@ class ZSumWidgetOW(OWWidget):
self
.
_chooseDimensionDock
=
ChooseDimensionDock
(
self
)
self
.
_chooseDimensionDock
.
hide
()
self
.
controlArea
.
layout
().
addWidget
(
self
.
_chooseDimensionDock
)
self
.
origin
,
self
.
scale
=
None
,
None
self
.
_chooseDimensionDock
.
widget
.
filterChanged
.
connect
(
self
.
_filterStack
)
self
.
_chooseDimensionDock
.
widget
.
stateDisabled
.
connect
(
self
.
_wholeStack
)
...
...
@@ -72,6 +73,16 @@ class ZSumWidgetOW(OWWidget):
self
.
_chooseDimensionDock
.
show
()
self
.
_chooseDimensionDock
.
widget
.
setDimensions
(
self
.
dataset
.
dims
)
image
=
self
.
dataset
.
zsum
(
indices
=
self
.
indices
)
if
self
.
dataset
.
transformation
:
px
=
self
.
dataset
.
transformation
[
0
][
0
][
0
]
py
=
self
.
dataset
.
transformation
[
1
][
0
][
0
]
xscale
=
(
self
.
dataset
.
transformation
[
0
][
-
1
][
-
1
]
-
px
)
/
len
(
self
.
dataset
.
transformation
[
0
][
0
])
yscale
=
(
self
.
dataset
.
transformation
[
1
][
-
1
][
-
1
]
-
py
)
/
len
(
self
.
dataset
.
transformation
[
1
][
0
])
self
.
origin
=
(
px
,
py
)
self
.
scale
=
(
xscale
,
yscale
)
self
.
_plot
.
addImage
(
image
,
origin
=
self
.
origin
,
scale
=
self
.
scale
,
xlabel
=
'µm'
,
ylabel
=
'µm'
)
else
:
self
.
_plot
.
addImage
(
image
,
xlabel
=
'pixels'
,
ylabel
=
'pixels'
)
self
.
_plot
.
addImage
(
image
)
self
.
open
()
else
:
...
...
@@ -84,9 +95,15 @@ class ZSumWidgetOW(OWWidget):
def
_filterStack
(
self
,
dim
=
0
,
val
=
0
):
image
=
self
.
dataset
.
zsum
(
indices
=
self
.
indices
,
dimension
=
[
dim
,
val
])
if
image
.
shape
[
0
]:
self
.
_plot
.
addImage
(
image
)
if
self
.
origin
:
self
.
_plot
.
addImage
(
image
,
origin
=
self
.
origin
,
scale
=
self
.
scale
,
xlabel
=
'µm'
,
ylabel
=
'µm'
)
else
:
self
.
_plot
.
addImage
(
image
,
xlabel
=
'pixels'
,
ylabel
=
'pixels'
)
else
:
self
.
_plot
.
clear
()
def
_wholeStack
(
self
):
self
.
_plot
.
addImage
(
self
.
dataset
.
zsum
())
if
self
.
origin
:
self
.
_plot
.
addImage
(
self
.
dataset
.
zsum
(),
origin
=
self
.
origin
,
scale
=
self
.
scale
,
xlabel
=
'µm'
,
ylabel
=
'µm'
)
else
:
self
.
_plot
.
addImage
(
self
.
dataset
.
zsum
(),
xlabel
=
'pixels'
,
ylabel
=
'pixels'
)
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