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XRD
darfix
Commits
6187a7c6
Commit
6187a7c6
authored
Jul 20, 2021
by
Julia Garriga Ferrer
Browse files
[orangecontrib][zsum] Use zsumWidget
parent
91b6b40e
Changes
1
Hide whitespace changes
Inline
Side-by-side
orangecontrib/darfix/widgets/zsum.py
View file @
6187a7c6
...
...
@@ -26,19 +26,17 @@
__authors__
=
[
"J. Garriga"
]
__license__
=
"MIT"
__date__
=
"
15/12
/202
0
"
__date__
=
"
20/07
/202
1
"
from
silx.gui.colors
import
Colormap
from
silx.gui.plot
import
Plot2D
from
Orange.widgets.widget
import
OWWidget
,
Input
from
darfix.gui.
utils
import
ChooseDimensionDock
from
darfix.gui.
zSumWidget
import
ZSumWidget
class
ZSumWidgetOW
(
OWWidget
):
"""
Widget that
sums a stack of images by the z axis.
Widget that
computes the background substraction from a dataset
"""
name
=
"z sum"
...
...
@@ -53,57 +51,17 @@ class ZSumWidgetOW(OWWidget):
def
__init__
(
self
):
super
().
__init__
()
self
.
_plot
=
Plot2D
(
parent
=
self
)
self
.
_plot
.
setDefaultColormap
(
Colormap
(
name
=
'viridis'
,
normalization
=
'linear'
))
self
.
controlArea
.
layout
().
addWidget
(
self
.
_plot
)
self
.
_chooseDimensionDock
=
ChooseDimensionDock
(
self
)
self
.
_chooseDimensionDock
.
hide
()
self
.
controlArea
.
layout
().
addWidget
(
self
.
_chooseDimensionDock
)
self
.
origin
,
self
.
scale
=
None
,
None
self
.
_chooseDimensionDock
.
widget
.
filterChanged
.
connect
(
self
.
_filterStack
)
self
.
_chooseDimensionDock
.
widget
.
stateDisabled
.
connect
(
self
.
_wholeStack
)
self
.
_widget
=
ZSumWidget
(
parent
=
self
)
self
.
controlArea
.
layout
().
addWidget
(
self
.
_widget
)
@
Inputs
.
dataset
def
setDataset
(
self
,
dataset
):
# Make sum of dataset data
if
dataset
:
self
.
dataset
=
dataset
[
0
]
self
.
indices
=
dataset
[
1
]
if
len
(
self
.
dataset
.
data
.
shape
)
>
3
:
self
.
_chooseDimensionDock
.
show
()
self
.
_chooseDimensionDock
.
widget
.
setDimensions
(
self
.
dataset
.
dims
)
image
=
self
.
dataset
.
zsum
(
indices
=
self
.
indices
)
if
self
.
dataset
.
transformation
:
px
=
self
.
dataset
.
transformation
[
0
][
0
][
0
]
py
=
self
.
dataset
.
transformation
[
1
][
0
][
0
]
xscale
=
(
self
.
dataset
.
transformation
[
0
][
-
1
][
-
1
]
-
px
)
/
len
(
self
.
dataset
.
transformation
[
0
][
0
])
yscale
=
(
self
.
dataset
.
transformation
[
1
][
-
1
][
-
1
]
-
py
)
/
len
(
self
.
dataset
.
transformation
[
1
][
0
])
self
.
origin
=
(
px
,
py
)
self
.
scale
=
(
xscale
,
yscale
)
self
.
_plot
.
addImage
(
image
,
origin
=
self
.
origin
,
scale
=
self
.
scale
,
xlabel
=
'µm'
,
ylabel
=
'µm'
)
else
:
self
.
_plot
.
addImage
(
image
,
xlabel
=
'pixels'
,
ylabel
=
'pixels'
)
self
.
_plot
.
addImage
(
image
)
self
.
open
()
self
.
_widget
.
setDataset
(
*
dataset
)
else
:
self
.
_plot
.
clear
()
self
.
_widget
.
_plot
.
clear
()
self
.
open
()
@
Inputs
.
colormap
def
setColormap
(
self
,
colormap
):
self
.
_plot
.
getImage
().
setColormap
(
colormap
)
def
_filterStack
(
self
,
dim
=
0
,
val
=
0
):
image
=
self
.
dataset
.
zsum
(
indices
=
self
.
indices
,
dimension
=
[
dim
,
val
])
if
image
.
shape
[
0
]:
if
self
.
origin
:
self
.
_plot
.
addImage
(
image
,
origin
=
self
.
origin
,
scale
=
self
.
scale
,
xlabel
=
'µm'
,
ylabel
=
'µm'
)
else
:
self
.
_plot
.
addImage
(
image
,
xlabel
=
'pixels'
,
ylabel
=
'pixels'
)
else
:
self
.
_plot
.
clear
()
def
_wholeStack
(
self
):
if
self
.
origin
:
self
.
_plot
.
addImage
(
self
.
dataset
.
zsum
(),
origin
=
self
.
origin
,
scale
=
self
.
scale
,
xlabel
=
'µm'
,
ylabel
=
'µm'
)
else
:
self
.
_plot
.
addImage
(
self
.
dataset
.
zsum
(),
xlabel
=
'pixels'
,
ylabel
=
'pixels'
)
self
.
_widget
.
setColormap
(
colormap
)
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