[core][dataset] Apply 2D ROI to the transformation matrices

darfix/core/dataset.py

@@ -720,6 +720,9 @@ class Dataset():
             if urls is None:
                 return
             new_data = Data(urls, self.running_data.metadata, self._in_memory)
+
+        if self.transformation:
+            transformation = [apply_2D_ROI(axis, origin, size, center) for axis in self.transformation]
         if indices is None:
             shape = list(self.data.shape)[:-2]
             shape.append(new_data.shape[-2])