From 2be9543f3e819091d05070cb299253df2f24ce4f Mon Sep 17 00:00:00 2001
From: opd16 on bm16ctrl <mauro.rovezzi@esrf.fr>
Date: Fri, 15 Nov 2024 14:23:27 +0100
Subject: [PATCH] add sandbox notebook for testing
---
notebooks/devel_sandbox.ipynb | 190 ++++++++++++++++++++++++++++++++++
1 file changed, 190 insertions(+)
create mode 100644 notebooks/devel_sandbox.ipynb
diff --git a/notebooks/devel_sandbox.ipynb b/notebooks/devel_sandbox.ipynb
new file mode 100644
index 0000000..19406c0
--- /dev/null
+++ b/notebooks/devel_sandbox.ipynb
@@ -0,0 +1,190 @@
+{
+ "cells": [
+ {
+ "cell_type": "markdown",
+ "metadata": {},
+ "source": [
+ "# Development sandbox notebook\n",
+ "\n",
+ "This notebook is for development and testing of new features and bug fixes only."
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": null,
+ "metadata": {},
+ "outputs": [],
+ "source": [
+ "%load_ext autoreload\n",
+ "%autoreload 2\n",
+ "\n",
+ "# Uncomment the following two lines if the plots do not show in the notebook\n",
+ "# import plotly.io as pio\n",
+ "# pio.renderers.default = \"iframe\"\n",
+ "\n",
+ "import os\n",
+ "from dataclasses import asdict\n",
+ "from IPython.display import display\n",
+ "from famewoks import __version__ as wkflver\n",
+ "from famewoks.datamodel import (\n",
+ " ExpSession,\n",
+ " ExpCounters,\n",
+ " CNTS_FLUO_XMAP,\n",
+ " CNTS_FLUO,\n",
+ " CNTS_CAS,\n",
+ ")\n",
+ "from famewoks.tests.datainfos import DATAINFOS, get_exp_session\n",
+ "from famewoks.plots import plot_data, plot_eshift\n",
+ "from famewoks.bliss2larch import (\n",
+ " search_samples,\n",
+ " show_samples_info,\n",
+ " search_datasets,\n",
+ " load_data,\n",
+ " get_scans,\n",
+ " get_group,\n",
+ " set_enealign,\n",
+ " apply_eshift,\n",
+ " set_bad_fluo_channels,\n",
+ " set_bad_scans,\n",
+ " set_bad_samples,\n",
+ " merge_data,\n",
+ " save_data,\n",
+ ")\n",
+ "from famewoks.bliss2larch import _logger\n",
+ "\n",
+ "# adjust the logger level:\n",
+ "# \"DEBUG\" -> show all messages\n",
+ "# \"INFO\" -> useful messages\n",
+ "# \"WARNING\" -> warnings only\n",
+ "# \"ERROR\" -> only errors\n",
+ "_logger.setLevel(\"INFO\")\n",
+ "\n",
+ "# show workflow version (and famewoks branch information)\n",
+ "branch = os.popen(\"cd ~/devel/famewoks; git branch --show-current\").read()[:-1]\n",
+ "_logger.info(f\"--> Using famewoks version: {wkflver} (branch: {branch})\")\n",
+ "\n",
+ "# define the counters names or use those already defined for BM16: CNTS_FLUO_XMAP, CNTS_FLUO, CNTS_CAS\n",
+ "CNTS_CAS_XPAD = ExpCounters(\n",
+ " ene=\"energy_enc\",\n",
+ " ix=[\"p201_1_bkg_sub\", \"p201_3_bkg_sub\", \"p201_5_bkg_sub\"], #: I0, I1, I2\n",
+ " fluo_roi=[\"xpad_roi1\"], # all detector names for ROI1\n",
+ " fluo_corr=[\"xpad_roi1\"], # all detector names (DT corrected)\n",
+ " fluo_time=[\"sec\"], # elapsed time, which is different for the spikes\n",
+ " time=\"sec\", # \"musst_timer\"\n",
+ ")\n",
+ "# define the experimental session metadata manually\n",
+ "session = ExpSession(\n",
+ " flag=1,\n",
+ " datadir=\"/data/visitor/a161838/bm16/20241113\",\n",
+ " proposal=\"a161838\",\n",
+ " session=\"20241113\",\n",
+ " proposer=\"Quantin\",\n",
+ " lc=\"AA, IK\",\n",
+ " elem=\"V\",\n",
+ " edge=\"K\",\n",
+ " comment=\"\",\n",
+ " counters=CNTS_CAS, # *NOTE* give here the correct counters names!\n",
+ " samples=[],\n",
+ " bad_samples=[],\n",
+ " bad_fluo_channels=None,\n",
+ " enealign=None,\n",
+ ")\n",
+ "\n",
+ "# (testing) otherwise it is possible to get the session from a collection of previous experiments\n",
+ "# session = get_exp_session(DATAINFOS, proposer=\"Isaure\",session=\"20241003\")\n",
+ "# session = get_exp_session(DATAINFOS, proposer=\"Rimondi\",session=\"20241001\")\n",
+ "# session = get_exp_session(DATAINFOS, proposer=\"Biswas\",session=\"20240924\")\n",
+ "# session = get_exp_session(DATAINFOS, proposer=\"Sanchez\",session=\"20240716\")\n",
+ "# session = get_exp_session(DATAINFOS, proposer=\"Stellato\",session=\"20240625\")\n",
+ "# session = get_exp_session(DATAINFOS, proposer=\"Bertrand\",session=\"20240910\")\n",
+ "\n",
+ "# display the session metadata\n",
+ "#display(asdict(session))"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": null,
+ "metadata": {},
+ "outputs": [],
+ "source": [
+ "samples = search_samples(session, ignore_names=[\"rack\", \"mount\", \"align\", \"bl_\", \"sample\"])"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": null,
+ "metadata": {},
+ "outputs": [],
+ "source": [
+ "sel_sample = 10\n",
+ "datasets = search_datasets(session, sample=sel_sample)"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": null,
+ "metadata": {},
+ "outputs": [],
+ "source": [
+ "sel_dataset = 0\n",
+ "dataset = datasets[sel_dataset]\n",
+ "load_data(\n",
+ " session,\n",
+ " dataset,\n",
+ " use_fluo_corr=False,\n",
+ " iskip=1, #: ignore the first point\n",
+ " istrip=1, #: ignore the last point\n",
+ " calc_eshift=True,\n",
+ " merge=True,\n",
+ " skip_scans=[],\n",
+ ")"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": null,
+ "metadata": {},
+ "outputs": [],
+ "source": [
+ "fig = plot_data(\n",
+ " dataset,\n",
+ " data=\"fluo\",\n",
+ " ynorm=\"area\",\n",
+ " show_slide=True,\n",
+ " show_i0=False,\n",
+ " show_e0=True,\n",
+ " show_merge=\"rebin\",\n",
+ ")"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": null,
+ "metadata": {},
+ "outputs": [],
+ "source": []
+ }
+ ],
+ "metadata": {
+ "kernelspec": {
+ "display_name": "sloth2411",
+ "language": "python",
+ "name": "python3"
+ },
+ "language_info": {
+ "codemirror_mode": {
+ "name": "ipython",
+ "version": 3
+ },
+ "file_extension": ".py",
+ "mimetype": "text/x-python",
+ "name": "python",
+ "nbconvert_exporter": "python",
+ "pygments_lexer": "ipython3",
+ "version": "3.12.7"
+ }
+ },
+ "nbformat": 4,
+ "nbformat_minor": 2
+}
--
GitLab